Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq33 246 4e-60 seq5 176 5e-39 seq3 134 2e-26 >seq33 Length=24047555 Score = 246 bits (272), Expect = 4e-60 Identities = 612/920 (67%), Gaps = 17/920 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||| || || || | || ||| Sbjct 18068004 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGAACAGCAAAGAGATCGACGTCCA 18067945 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || || | ||| ||| | | | | |||||| || | || || | Sbjct 18067944 GGTCAAACTTATTGGCAAAAAAGTGGTGCT--TACGT-AGTATCCAGTTCAAGTCGCCAG 18067888 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| || ||||| || ||||| || || |||||||| || || || | || || | Sbjct 18067887 CTCCGAAAACACACACTGAGCGCACATGGACCCCGCTGCAGGGTGGGTAAGGTGCACCCT 18067828 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || || |||| |||||||| || ||||| | | | ||||||||| | Sbjct 18067827 GGGCAACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCAACTGACTGCATGTCAG 18067768 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||| ||||||| | | | || || || || || | || | ||||| | || Sbjct 18067767 ACAAGTCATACTTGTGGCTTAAGGACAGGGAGCCTGGGACCTCAGGGATCCTCTGAATAG 18067708 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || ||||| || ||||| || | | |||||||||||||| ||| Sbjct 18067707 TGGCCCAGAGATACTCATCTGGGCTGTACGTGTCTTGTGCCCACTCCATGAACT-TTTGA 18067649 Query 162419 CCGTTTT-ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 ||||| || | ||| | || ||||| ||| | || | ||| || || || Sbjct 18067648 ATGTTTTCATTCTCTAGCACATACCTCACGTACTCCCTACTGACCACAAAATAGGCACTG 18067589 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| ||| | | ||||| || ||||| | ||||| || | | Sbjct 18067588 CCCGAAAACAGAGGTGTTTTGAGTGGAGGATGCACTTTGACAGTCCCCGTATTAGTCAAC 18067529 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGG---G 162594 |||| | | |||||| || |||| ||||||| | |||| | |||| || Sbjct 18067528 TTTCCGTTAATGACCACATGATGCTTCTTCCACCT-TTCTTCTT--TATTAGATGGCATC 18067472 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 | ||| || || || |||| |||| || | ||| |||| | || || || || Sbjct 18067471 TTTTCCGTTTCCAGGTTGTTTTCACCCATGAATGACTTGAGCTTCCTGACAATTTCCAGG 18067412 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| ||| ||||| || || || ||||| || | || ||||| || | || Sbjct 18067411 TTGGTTTTAGTAGGAAAATCTAACCCACAAAGATTGATCAAGTACTTCCAATTGGCACTC 18067352 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | || ||| || |||| | ||||| ||||||||||| || |||||||| || || || Sbjct 18067351 ATTCTGTAGAGGTCCTTCATGCAGTTGAGATCGGCCTGAACCCGACTCCAGGATGCATAA 18067292 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || |||||||| | |||| |||||||| || |||||| || | || ||||| Sbjct 18067291 ACTACATTCTCCAACTGACTGGCCACAAAGACGTTACTGAAACAGGATGCGATGCCCATT 18067232 Query 162835 ACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || || || | | | |||| | ||| | ||||| || | |||||| | |||| Sbjct 18067231 ACCGC---TGCTATAAAGGAGTCCTCTGATTTTTTGTCTACATGAATGCAGTAGAAATTC 18067175 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| |||||||||||||| | || || | ||| || || || || || ||||| Sbjct 18067174 TGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 18067115 Query 162952 ATAGAATACGCTATGGGGAA 162971 || ||||| || || ||||| Sbjct 18067114 ATGGAATATGCAATTGGGAA 18067095 >seq5 Length=64221397 Score = 176 bits (194), Expect = 5e-39 Identities = 232/322 (72%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | ||||| || || || || | ||| || || || | || Sbjct 7194064 CATAGAGGGTGAGGCAGGCTGTTCCCGAGATCTTCCCAGAACTAAAGGTGTTGAAGAGAC 7194123 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| | || || |||||||||| || |||||||| || || | || || || || Sbjct 7194124 ACATGTAGCACCCCTCGTCCTCCAGCGTTGTGTTCCAGAAGGTGATGGTTGAGTTCTGGA 7194183 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || | || |||||||| | | ||| ||| | |||||||| ||||| || || | Sbjct 7194184 GTCCCAGCTCGGTGATGTTCACTCTGCCCTGGTAGGCGGGCTGGACCACAACCCCATGGT 7194243 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 || |||| | || |||||||||| ||||| ||||||| | |||||||| || || | Sbjct 7194244 TCCTGCTGTAGGTAACCATGTTTTCTGGGCTTACAGCCTTTTTTTTCTGCCATGTCACAA 7194303 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || |||| | | | | ||| ||||| |||||||| || ||||||||||||| | Sbjct 7194304 TCAAGGCTTCCTGGGCAGATTGCAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAGCA 7194363 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | |||| || || || ||||| Sbjct 7194364 ACTTTTCATCCTGGGTCACCAC 7194385 Score = 134 bits (148), Expect = 2e-26 Identities = 179/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| || || || ||||||||| || | |||| ||| || ||||||| Sbjct 7191660 ACAGTTTGCTTGTACTCAGTCACAGTCCCCTGGTACAGCACTTGGCAGATTACCTCCT-- 7191717 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | |||||||||||||| || ||||| || | || ||||| || |||||||| |||||| Sbjct 7191718 -TCCCCACTTGACTTTTGGGGTCTTTGACACGGAGTATGCTGGTGACAGATGTGGTCCCG 7191776 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 ||| | |||| | | | |||||||| || || || || || ||||| ||||| | Sbjct 7191777 TTAGGGTGTAACAGACTCTCGGTACTATTCTCAATCCCTGACCCAGCAACCTTCCAGGAG 7191836 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | || ||||| | ||||| ||||||||||| || |||| ||||| ||||| Sbjct 7191837 ATCATGGGTGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAGAAA 7191896 Query 171743 TCATAGTG 171750 | ||||| Sbjct 7191897 TTGTAGTG 7191904 >seq3 Length=68631033 Score = 134 bits (148), Expect = 2e-26 Identities = 393/594 (66%), Gaps = 15/594 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | || Sbjct 16777690 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTTAGATACTTGG 16777631 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 16777630 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAACGAATCTGCTGGAATATAAT 16777571 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| || || Sbjct 16777570 TCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAAAAAAGCAT 16777511 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | |||||| |||| Sbjct 16777510 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAGAGATAAAATT 16777451 Query 177127 TACAGG--AAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | |||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 16777450 TACATGTAGAGATGGTA--GGAATCAAATTTTTATCATTCACATATTCTCCAAATGCTTG 16777393 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || || || || || ||| || ||||| ||| || || || || | | Sbjct 16777392 CCCATAGGTGTGGATTTCAATACTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 16777334 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || ||||| || || ||||| |||||||| || || Sbjct 16777333 GTTCAGGGTTCCAGTTACTTACAACCCAACACACCAACTT-CTCTTTGCTTGGCAC---- 16777279 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || || | || | | || | ||| | | ||||| ||||| || ||||| | Sbjct 16777278 TTCAAACACGAA-GGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTG 16777220 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGC 177420 |||| || | ||| |||| || || ||||| || | || ||||| || ||| Sbjct 16777219 AGTCACGGCGGTAGGTTAGAGTCAGGTTGAACAGATGCTCAATACCACTCTTCTGGGGAG 16777160 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGG 177474 | | | | || ||||| || |||||||| ||||| || || |||| ||||||| Sbjct 16777159 TATGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGCGGTCTGG 16777106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578326848292800