Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq25 102 2e-16 seq138 98.7 2e-15 seq2 93.3 1e-13 seq9 87.8 4e-12 seq34 86.0 1e-11 seq16 84.2 5e-11 >seq25 Length=31340621 Score = 102 bits (112), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || ||||| || || | || | || || ||| || ||| Sbjct 4762906 CAGATTTTTGTAAAAACCCTTACAGGGAAGACTAATACACTCGAGGTTGAACCCTCGGAC 4762847 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| ||||| ||||| || || || |||| |||| || || ||| Sbjct 4762846 ACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAG-AATTCCTCCTGATCAGCAA 4762788 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| || || ||||| ||||||||||| | |||||| | || |||||| | Sbjct 4762787 AGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATT 4762728 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTT 206388 ||||| ||||| || ||||| ||||| |||| ||| Sbjct 4762727 CAGAAGGAGTCCACCCTTCATCTTGTGCTGAGGCTT 4762692 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 204754 AAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCT 204813 ||| |||| ||||| ||||| || ||||| ||||| | || ||||||| |||||| | Sbjct 4762692 AAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACG 4762751 Query 204814 TCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 4762752 TCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGA 4762794 >seq138 Length=1287892 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || || || || || || ||||| |||| ||||| Sbjct 343629 AAAATG---CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAG 343573 Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 |||||| | || || ||| ||||| || || |||||||| ||| || Sbjct 343572 CCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCCCCT 343513 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| || || || ||||| || || ||||||||||||||||| | ||| | | ||| Sbjct 343512 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGCCGTACTCTTTCTGAT 343453 Query 206344 TACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||||||||||| || || ||||| || Sbjct 343452 TACAATATCCAGAAAGAGTCCACCCTGCACCTGGT 343418 >seq2 Length=69027483 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || |||| || || || || |||| || ||| || || || | ||| Sbjct 23646117 AAAACCCTTACAGAGAAGACTATTACAATGGAGGTTGAACCCTCGGATACTATAGAAAAT 23646176 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || ||||||||| || || Sbjct 23646177 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCATCAAAGACTGATGTTT 23646236 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || | ||||| ||||||||||| | || || | || |||||| | ||||| ||||| Sbjct 23646237 GCTGATAAGCAACTGGAAGATGGACGTACCGTGTCTGACTACAACATTCAGAAGGAGTCC 23646296 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| | || |||| ||||| Sbjct 23646297 ACCCTTCATCAGGTGCTGAGGCTTCG 23646322 >seq9 Length=54061371 Score = 87.8 bits (96), Expect = 4e-12 Identities = 151/217 (70%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAA 206223 |||||| ||||| ||| || || || || || || || ||||| |||| |||| Sbjct 30845222 AAAATG---CAGATCTTTATGAAGACCCTGACTGGCAAGACTATCACCCTGGAGATGGA- 30845277 Query 206224 AGTTC--TGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGC 206281 | || |||||| | || || ||| ||||| || || |||||||| ||| | Sbjct 30845278 -GCTCAGTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGATAAAGAAGGCATTCCTC 30845336 Query 206282 CGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCG 206341 | ||| || || || ||||| || || |||| | |||||||||| | ||| | | | Sbjct 30845337 CTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCTGCTGGAAGATGGCCGCACTCTTTCTG 30845396 Query 206342 ATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 | |||||| ||||||||||||| || || ||||| || Sbjct 30845397 ACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 30845433 >seq34 Length=22531781 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| | ||||| |||||| ||||| || || | || |||| || |||||| Sbjct 4178330 CGAAGTCTCAATATAAGGTAAAGAGTGGACTCCTTTTGAATGTTGTAGTGAGACAAAGTG 4178389 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| | | | || || ||||| |||| ||| ||| Sbjct 4178390 CATCCATCTTCCAGTTTCCTGCCAGCAAAGATTAGCCTTTGCTGA 4178434 >seq16 Length=44863414 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| || || |||||||| ||||| || || ||| Sbjct 42573856 AAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGTAAG 42573797 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | |||||| | || ||| | | ||||| ||||| || | ||| Sbjct 42573796 CAACTGGAAGATGGATGTACTTTGTCTGACCACAGCATTCAGAAGGAGTCCACCCCTCAT 42573737 Query 206374 CTTGTTTTGAGACTTC 206389 ||| | |||| |||| Sbjct 42573736 CTTATGCTGAGGCTTC 42573721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181600588745103