Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5 255 7e-63 seq25 183 4e-41 seq11 159 4e-34 seq13 145 9e-30 seq78 111 2e-19 >seq5 Length=64221397 Score = 255 bits (282), Expect = 7e-63 Identities = 248/319 (78%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| | | ||||||||||||| || || ||| | | ||| || ||| Sbjct 7194385 GTGGTGACCCAGGATGAAAAGTTGCTGCTGAACACACCTGCATCCTTAAGATGTTCTCTG 7194326 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || || | ||||| | ||||||| || |||||||||| ||| | | ||||| Sbjct 7194325 CAATCTGCCCAGGAAGCCTTGATTGTGACATGGCAGAAAAAAAAGGCTGTAAGCCCAGAA 7194266 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || | |||| |||| ||||| ||||||||||| || || ||| || Sbjct 7194265 AACATGGTTACCTACAGCAGGAACCATGGGGTTGTGGTCCAGCCCGCCTACCAGGGCAGA 7194206 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 | ||||||||| |||| |||||||| |||||||||||||| || ||||| || || | Sbjct 7194205 GTGAACATCACCGAGCTGGGACTCCAGAACTCAACCATCACCTTCTGGAACACAACGCTG 7194146 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||||||||||||||||| || ||||| ||||||||| | |||||||| |||||||| Sbjct 7194145 GAGGACGAGGGGTGCTACATGTGTCTCTTCAACACCTTTAGTTCTGGGAAGATCTCGGGA 7194086 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 7194085 ACAGCCTGCCTCACCCTCT 7194067 Score = 188 bits (208), Expect = 8e-43 Identities = 208/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || || || || ||||| |||||||| || ||||| || Sbjct 7191925 GTACAGCCCACAGTATTCCTTCACTACAATTTCTTTGAAGACCACCTAAATATCACTTGC 7191866 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||||||||| |||| ||| | |||||| || | ||||||| ||||| Sbjct 7191865 TCTGCCACTGCCCGCCCAGCACCCATGATCTCCTGGAAGGTTGCTGGGTCAGGGATTGAG 7191806 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| |||| ||| | || |||| || || || ||||| ||||| |||||| Sbjct 7191805 AATAGTACCGAGAGTCTGTTACACCCTAACGGGACCACATCTGTCACCAGCATACTCCGT 7191746 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||| ||||| |||| |||||||| |||||||||||| | ||| ||| Sbjct 7191745 GTCAAAGACCCCAAAAGTCAAGTGGGGAAGGAGGTAATCTGCCAAGTGCTGTACCAGGGG 7191686 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| ||| | | | | ||||||| | ||| |||| Sbjct 7191685 ACTGTGACTGAGTACAAGCAAACTGTGAACAAAGGTA 7191649 >seq25 Length=31340621 Score = 183 bits (202), Expect = 4e-41 Identities = 540/821 (66%), Gaps = 31/821 (4%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||| | || | ||||| | ||||||| ||||| | || |||||| Sbjct 9264945 GTACTCCCTGGTGCTCGTGGTGGGGCTCCTGGGCAATGTGGTGGTGGTGCTGATCCTCAC 9264886 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||| |||||||| | ||||||||||||||| ||| |||||||||| || ||| Sbjct 9264885 CAAGTACAGGAGGCTCAAGGTCATGACCAACATCTATCTGCTCAACCTGGCGATTTCTGA 9264826 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || ||||| ||||| |||| | | ||| ||||| | Sbjct 9264825 CTTGCTCTTTCTCTTCACTCTTCCCTTCTGGATCCACTAC--GTTGGGTGGAAC----GA 9264772 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | | |||||| ||| | | ||| ||| || ||| |||| Sbjct 9264771 GTGGGTTTTTGGTCCTTTCATGTGCAAGCTCCTCTCGGGGTTTTATTACCTGGGCTTGTA 9264712 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || ||||||||| |||| | |||||||| || || | || |||| Sbjct 9264711 CAGCGAGATCTTTTTCATCATCCTGCTGACCATCGACAGGTACCTGGCCATCGTCCACGC 9264652 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | | ||| ||| | | || || | |||| || | |||| Sbjct 9264651 CGTGTTTGCCCTTCGAGCCCGGACGGTGACTTTCGGTGTCAGCAGCAGCATCTTCACCTG 9264592 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | | ||||| ||| ||| || | || || ||||||||| |||| ||| | | | | | Sbjct 9264591 GGTCCTGGCAGTGCTGGCGGCCCTCCCCGAATTTATCTTTCATGAGTCCCAACAGGGCTC 9264532 Query 9030 AGGCAAGGGGGTCTGCCAAGCCTC-CTACAC------------AGACTTTTGGAAGGGGG 9076 | || ||||| || |||| |||| | |||| |||||| | Sbjct 9264531 CGAAGAGTCTGTCTG-CAGTCCTCTCTACCCAGAGGACGAGGAAGACAGCTGGAAGCGTT 9264473 Query 9077 TTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCT 9136 | ||| | || |||| ||| | ||| || ||| |||| ||||||||| ||| Sbjct 9264472 TCCATGCTCTGAGGATGAACATCTTGGGTCTCGCGCTCCCTCTGCTCATCATGGCCGTCT 9264413 Query 9137 GCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGC-A 9194 |||||| ||||| || || || | | |||| ||||| || ||| | | | Sbjct 9264412 GCTACTCTGGGATCATAAAAACACTGCTGAGATGCCC-CAACA----GAAAAAAGTACAA 9264358 Query 9195 CGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAA 9254 ||| || ||||||||| ||||| ||||| | | ||| | || |||| ||||||||| Sbjct 9264357 AGCCATCCGGCTCATTTTTATCATCATGGTGGTCTTTTTCATTTTCTGGACCCCCTACAA 9264298 Query 9255 CGTCCTGCTCATTTTACACACCTACCAAGAGGCCATTTTTG-GGCCAGACTGTGAAGCGC 9313 | | | ||| || | | | ||| | | | | | | ||| ||||| ||||| Sbjct 9264297 CCTGGTTCTCCTTCTCTCTGCTTTTCAAATGAACTTACTGGAGTACAG-CTGTG-AGCGC 9264240 Query 9314 -GGCGCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGC 9372 | | ||||| ||||| | |||| | ||| ||||||||| |||||||||||| Sbjct 9264239 AGTAGACATCTGGACCTGGCCATGCAGGTGACAGAGGTGATCGCCTATACCCACTGCTGC 9264180 Query 9373 GTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCCA 9413 |||||||| ||||||||||| || || ||||| | |||||| Sbjct 9264179 GTCAACCCTGTCATCTACGCCTTCGTCGGCGAGAGGTTCCA 9264139 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/99 (80%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 9317 GCAGGG---TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCG 9373 |||||| ||||| ||||| | |||| | ||| ||||||||| ||| |||||||| | Sbjct 9308929 GCAGGGAGCTGGACGTGGCCATTCAGGTGACGGAGGTGATCGCCTACACTCACTGCTGTG 9308988 Query 9374 TCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||||||||||||| | |||||||| || | ||||| Sbjct 9308989 TCAACCCCGTCATCTATGTCTTTGTGGGTGAGAGGTTCC 9309027 >seq11 Length=52463945 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || | ||| || | ||||||||| ||||| | |||||||| ||||||||||| Sbjct 43836508 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCGATGTTGAAGGGC 43836449 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || |||||||||||||| || |||||||||||||||||||| || |||||||| | || Sbjct 43836448 ACGCCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 43836389 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||| |||||||| ||| ||||| || ||||| ||||| Sbjct 43836388 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 43836348 >seq13 Length=48154242 Score = 145 bits (160), Expect = 9e-30 Identities = 131/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| | | |||||||| Sbjct 39520657 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTAGTGGAGGTGA 39520716 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| |||| |||| || | |||||||| || |||| Sbjct 39520717 TGCCCCAGGCAGAGAACCACA------------GCCCAGATGTCAAGGAGCACGTGAACT 39520764 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| ||| || |||| ||||| ||| Sbjct 39520765 CCCTGGGGGAGAAGCTGAAGACCCTCAGACTGCGGCTCCGGCGCTGT 39520811 Score = 116 bits (128), Expect = 4e-21 Identities = 197/278 (71%), Gaps = 8/278 (3%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCA-GCTGAATTTTCAGGGGCTCCAC 146930 || |||||||| ||||| | || || ||| || | ||||||||||||| ||||| | Sbjct 3963749 ATTTTGAGCTTTGGGAAAGCTCTTGG-TTCTTGTAGAAGCTGAATTTTCAGTGGCTCAAT 3963807 Query 146931 GTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCC 146990 ||| || ||||| | || || | |||| | |||| ||||| | | || ||| | Sbjct 3963808 GTGATTCAGGTAAAAATGTGCAT-TCCCAAAGAATGCATAAAGTTATCTGACTGCAGGTC 3963866 Query 146991 GGTCACGTGGGCCACCATGT-AGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCC 147049 || | ||| | | ||||| |||| ||||| | |||| | |||||||| || || | Sbjct 3963867 CGTGATGTGTGTAATCATGTAAGGTAAGCAGGGCATAGCACTCGATGTTGAAAGGCACGC 3963926 Query 147050 CCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCAC-G 147108 ||| ||||||| | || ||||| ||||||||| || || |||||||| | ||| | Sbjct 3963927 CCAAGCCCATGACTCCTGACCTTTGGTACAGCCAACAGGACAGCTCCCCAT---TCACTG 3963983 Query 147109 TAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || |||||||| | | ||||| || |||||| |||| Sbjct 3963984 TAGAACTGGCAGAAGGCATGGCATGGAGGCAGCACCAT 3964021 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||||||||| || || | |||||||| |||||||||||||| || || || ||||||| Sbjct 39522858 AGCTTCAAGAGAAAGGCATCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 39522917 Query 178522 TAGAAGCTTACATGACAACAAAAAT 178546 ||||||| ||||||||| | || || Sbjct 39522918 TAGAAGCCTACATGACAGCGAAGAT 39522942 >seq78 Length=8086754 Score = 111 bits (122), Expect = 2e-19 Identities = 191/272 (70%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGT-TCCTGGCCAGCTGAATTTTCAGGGGCTCCA 146929 ||| |||||||| || || | || || | || | | |||||||||||||| ||||| | Sbjct 260199 AATTTTGAGCTTTGGTAAAGCTCTTGGTTCTCATAGA-AGCTGAATTTTCAGTGGCTCAA 260141 Query 146930 CGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGC 146989 ||| || || || | || || || | || | |||| ||||||| | |||| ||| Sbjct 260140 TGTGATTTAGTTAAATATGTGCATCTCTCAAAGAATGCATAAAGTCCACTGGCTGCAGGT 260081 Query 146990 CGGTCACGTGGGCCACCATGT-AGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACC 147048 | | | || || ||||| | |||| ||||| | ||||| | ||| |||| || | Sbjct 260080 CCCTGATGTATGCAACCATATAAGGTAAGCAGGGCATAGCTCTCAATGCTGAAAGGCATG 260021 Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACG 147108 |||| ||||||| | || || || ||||||||| ||| || ||||||| || || | Sbjct 260020 CCCAAGCCCATGACTCCTGATCTATGGTACAGCCAGCAGGACAGCTCCCATTC-ACCTTG 259962 Query 147109 TAAAACTGGCACAGGATGTGGCACGGCGGCAG 147140 || |||||||| || ||||| || ||||| Sbjct 259961 TAGAACTGGCAGAGAGCATGGCATGGAGGCAG 259930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583381929175200