Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq83 141 8e-29 seq25 91.5 1e-13 seq2 87.8 2e-12 seq17 86.0 6e-12 >seq83 Length=7591375 Score = 141 bits (156), Expect = 8e-29 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| ||| |||| ||||||||||| || ||||| Sbjct 414004 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 413945 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | || ||||||||| |||||| ||| | | | Sbjct 413944 GATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCTTGGATCTTCGCCTTGACATT 413885 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || ||||||| || ||||| Sbjct 413884 CTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 413825 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 413824 GAAGATCTGCATT 413812 Score = 140 bits (154), Expect = 3e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| ||| |||| ||||||||||| || ||||| Sbjct 414232 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAA 414173 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | || | || ||||||||| |||||| ||| | | | Sbjct 414172 GATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCTTGGATCTTCGCCTTGACATT 414113 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || ||||||| || ||||| Sbjct 414112 CTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 414053 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 414052 GAAGATCTGCAT 414041 >seq25 Length=31340621 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 35512 ACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAA 35571 ||||| | ||||| ||| | ||| | || |||||| ||||||||||| || | ||| Sbjct 4762686 ACCACAAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAA 4762745 Query 35572 GGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAAC 35631 || || | || ||||| |||||||| ||||| |||| | ||||| || | ||||| Sbjct 4762746 AGTACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAAT 4762805 Query 35632 GCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTC 35691 || ||||| ||| |||||| || | | || | | ||||| | ||| ||||| Sbjct 4762806 TCT-TCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTC 4762864 Query 35692 CACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | || || || || | ||||| ||||| |||||||| Sbjct 4762865 GAGTGTATTAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 4762909 >seq2 Length=69027483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||||| |||| ||| | || |||||| ||||||||||| || | | Sbjct 23646328 CCACCACGAAGCCTCAGCACCTGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGAC 23646269 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||| |||||| | ||||| |||| | || || || | |||| Sbjct 23646268 ACGGTACGTCCATCTTCCAGTTGCTTATCAGCAAACATCAGTCTTTGATGATCAGGAGGA 23646209 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | || || | ||| ||| Sbjct 23646208 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACC 23646149 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 |||| || || || || | || | ||||| || || ||||||| Sbjct 23646148 TCCATTGTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCA 23646103 >seq17 Length=43943611 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || |||||||||| || ||||| Sbjct 21311357 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTCCCCTGCAAA 21311416 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||| | | ||||||||| | |||| || || | ||| |||||| ||||| | | Sbjct 21311417 TATGAGTCTCTGCTGGTCAGGGGGAATGCCTTCTGTATCCTGGATCTTGGCCTTCACATT 21311476 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||| | | |||||||||| ||| | || || || |||| |||||||| Sbjct 21311477 CTCAATGATGTCATTGGGCTCCACCTCCAGGGTGGTGGTCTTGCCAGTCAGGGTTTTCAC 21311536 Query 35725 AAATATCTGCATTCTGT 35741 ||| || |||||| ||| Sbjct 21311537 AAAGATGTGCATTTTGT 21311553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450711651358440