Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq161 322 7e-83 seq67 264 2e-65 seq58 212 9e-50 seq82 163 4e-35 seq13 140 4e-28 seq4 129 8e-25 seq7 123 3e-23 seq19 120 4e-22 seq87 118 1e-21 seq25 107 3e-18 seq12166 87.8 2e-12 seq11 84.2 3e-11 >seq161 Length=830332 Score = 322 bits (356), Expect = 7e-83 Identities = 626/928 (67%), Gaps = 30/928 (3%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 39326 ||||||||| | |||| || | |||| ||||||| | | ||||| |||||||| Sbjct 529767 TTTAAAAGTTAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCCATCC 529826 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || | || || | ||||| || || ||||| || ||||| | ||| ||||| | Sbjct 529827 TCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCT 529886 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| ||||| | | || | || ||||| || | || || | Sbjct 529887 CCATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTCCAGCATAA 529946 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 |||||||| ||||| || ||||| ||||||| |||||||| || || || | Sbjct 529947 GCCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCT 530006 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | | || | || || || || ||| | | ||| || || || | | ||| | Sbjct 530007 TCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCATTGATAATTGTTT 530066 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | ||||| || || ||| |||| | ||||| ||||| | |||||| |||| Sbjct 530067 CTTTTACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGGCAAAGT 530126 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| |||||||||| | ||||| | ||| || ||||||||||| |||||||| | Sbjct 530127 CACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCA 530186 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||| |||||||||||| || || | Sbjct 530187 GTCCTCGTTTCTTGAGC-----------------------AGAAAAGAAGATTCCCTCCA 530223 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCT 39803 | || ||||| || |||| | ||||| || | | || || | ||| | | Sbjct 530224 CAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAACGCA 530283 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| ||||||||||| ||||||||||||||| | || ||||| |||||| | | Sbjct 530284 AGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGAAGAGAAATT 530343 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | ||||||| || || || || | |||||||||||||| ||||| | Sbjct 530344 CCCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 530403 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || || |||| | ||||| |||||||| || ||| Sbjct 530404 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCTT 530463 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | ||||| ||| ||||||| ||||| ||||| |||||||| || ||| | || |||| Sbjct 530464 GGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGAAAGCCA 530523 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 | || ||||||||| ||| || || ||| | ||||| | || || Sbjct 530524 GAAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCC 530583 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || | | | || || || ||||||||||| || ||||| || || || |||| | || Sbjct 530584 TGGA-AGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACACATCTGCC 530642 Query 40164 ATATATCACGATATTGTATTGGAAAAAT 40191 | ||| || | |||| || ||||| || Sbjct 530643 AGATACCATGGTATTCCATAGGAAAGAT 530670 >seq67 Length=10555288 Score = 264 bits (292), Expect = 2e-65 Identities = 586/870 (67%), Gaps = 28/870 (3%) Strand=Plus/Minus Query 39347 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406 ||||| || ||||| ||||| || || || || || |||||||| |||||||| ||||| Sbjct 3668870 TTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCCATAAAATCAAAGGGATTT 3668811 Query 39407 GTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCT 39466 ||| | | | ||| ||||| | ||| || ||||| || || |||||||| Sbjct 3668810 TCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCACAAGTAATCTTTCAGCTACAAATTCA 3668751 Query 39467 ATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT 39526 || || |||||| |||| ||||| | ||||| |||||| | | || ||| Sbjct 3668750 ATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCAACTGGCAAGTCTTCTGTT 3668691 Query 39527 AGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACT- 39585 | |||||| | || || | || || |||| | ||| | || ||||| | | Sbjct 3668690 AAAAACTCCTGCTCAATTTTGACAGC-------ATTAACAATGAT-CTCCCTCACCCTTT 3668639 Query 39586 ----CGGTGG----ATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGG 39637 | | | || | ||| | | |||||||| ||| || |||||| | | || Sbjct 3668638 TCTTCTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAAGTCATAGAGAAGT 3668579 Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 | |||||||| | || | || || |||||||||||||||| || |||| | ||| Sbjct 3668578 TCTTCATCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATGGGACCTCTCTTC 3668519 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 || | ||| || || |||||||||||||| || ||||| || ||||| || || | Sbjct 3668518 TTTAACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCACTGATG 3668459 Query 39758 GCAACAAGTCTCTCTCCGTAACTTG--TATCATTATG-TATCCACTTCTGTGCCCAATCA 39814 || || | ||| || || || | | | || | || |||||| | | ||||| || Sbjct 3668458 GCCACCACTCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCACAGGGCCCAGTCT 3668399 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTT--TTTCAT 39872 | ||| ||||| || | |||||||||| || |||||||| | | ||| | |||| | Sbjct 3668398 GTTTTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAA-AATTTCCCTTTCTT 3668340 Query 39873 CACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAA 39932 |||| | | |||||||||| || ||| || || | ||| || | || | | Sbjct 3668339 GGG-ATCTCTGATTCTAGTATCTATTAGCAAACTGTATATCTTTGAGTGAACATTCTTTA 3668281 Query 39933 TCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATC 39992 | || ||||| || || ||||| | || || | || ||| ||||| || ||| | Sbjct 3668280 TGAGAATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCTCCTGACTAAAGC 3668221 Query 39993 TTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC---AAAAAATGCCAATACAT 40049 | ||| ||||||||||||| | |||||||||| | || |||||| || || | || Sbjct 3668220 TCTCCACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAAAAAGCTAAGATAT 3668161 Query 40050 GTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATA 40109 | | |||||| || ||||| | | | | || ||| ||| | || ||| ||||||| Sbjct 3668160 GAGAGAGAAAATAATTCTCATCTGATTTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATA 3668101 Query 40110 TA-TCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATA 40168 | || || ||||| |||||||| || || |||| ||||| || ||||| ||||| ||| Sbjct 3668100 AAGTCAACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCATACATTTTCCAAATA 3668041 Query 40169 TCACGATATTGTATTGGAAAAATAACAAAT 40198 || | || || |||||||| || |||||| Sbjct 3668040 TCGGGGTACTGAATTGGAAATATGACAAAT 3668011 >seq58 Length=13050397 Score = 212 bits (234), Expect = 9e-50 Identities = 614/936 (66%), Gaps = 18/936 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| || ||| |||| || | |||| ||| || | | |||||| ||||||| Sbjct 9035714 TTTAGAAATCAGCATCCAAGGTAAAAGAATTCCCTGTTGGATTTGACATCTCTCCCATCC 9035773 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || ||||| || ||||| || || ||| | ||| |||| ||| ||||| | Sbjct 9035774 TCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCTG-TGAAATATTCT 9035832 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||| | ||||| | | | | || |||| || | | || | Sbjct 9035833 CCATAAAGTCAGATGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCTTCATCATAA 9035892 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 || ||||| || ||||| || || ||||||| || ||||| || ||| | Sbjct 9035893 GCCTGTCTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTCATCCCAGTGAACT 9035952 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | |||||| | || ||||| | ||| | | || || | | | ||| Sbjct 9035953 TCACAGGCAAGGCCTCCATGAGGAACTCCTGTTCTAAGCTGACAGCATTGATAAATATTT 9036012 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | ||||| || || ||| || | | ||||| ||||| | |||||| ||| Sbjct 9036013 CTTTTACTCTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAGAGT 9036072 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 ||||| ||| ||||||||||| ||||| | ||| | |||| | || |||||||| | Sbjct 9036073 CACAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAACTT--AGGCCAGGCATCA 9036130 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 || | || |||| | | ||||| | ||||||| || | |||||| | ||||| | Sbjct 9036131 ATCCCCATTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCCTTCCA 9036190 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCT 39803 | || ||||| || |||| | |||| ||| | | || || | ||||| | | Sbjct 9036191 CAGCGGCAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAATCCAATGCA 9036250 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 || ||| |||||||||||||| |||| |||||||| || ||||| |||||| | | Sbjct 9036251 AGACCTAATTTACTTTCTTCTTTACATAAGGTATTGTTTCAATGGCATTGAAGAGAAATT 9036310 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||||| || || || | |||||||||||||| |||| | Sbjct 9036311 CCCTTTCTTTGAAATCTTTAA-----GTGTCAATAAGGAGACTATACATTTCACAATGTA 9036365 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 |||||| || || || || || | || ||||| |||| |||||||| || || Sbjct 9036366 -GTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTGAACTTCCT 9036424 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAA-AAATGCC 40042 | |||| ||| ||||||||||||| | ||| |||||||| || ||||| |||| | Sbjct 9036425 GGCTTAATCACTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAATTCA 9036484 Query 40043 AATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTG-ATATC 40101 | ||| ||||||||| | | || | | ||| | | ||| || | || || Sbjct 9036485 TAATTATGAGACATAAAATATCATACCTCAGATTTCAGGGCTTCCTAGT-ATAGAATGTC 9036543 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 || || ||| |||| | || ||||| |||| || | || ||||| || | || | Sbjct 9036544 CTTGGAAATAGCTACCACCTCTTCTGTCAAAAAGGAACCTTCAGCCTTCTTAGAAATCTG 9036603 Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 ||| |||||| | ||| || ||||| | ||||| Sbjct 9036604 CCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 9036639 >seq82 Length=7573503 Score = 163 bits (180), Expect = 4e-35 Identities = 368/552 (67%), Gaps = 12/552 (2%) Strand=Plus/Plus Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || ||| | |||| ||||| ||||| || || | ||| || ||||||||||| | |||| Sbjct 1078427 AATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCTAGGC 1078486 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 || || || | | |||||| | ||||| || |||||||||||||| || Sbjct 1078487 ATCAG--------TTCTTATATTAAATATTGATGCAAATGAGCCAGAAAAGAAGATTTCT 1078538 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA---TCCAC 39799 | | | || || | ||| | | || ||| | | || || | |||| Sbjct 1078539 CCCATAGTGGCCAAGACTACAGCACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTCCAA 1078598 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 | || ||||| ||||||||||| || |||| ||| |||| || ||||| ||||| Sbjct 1078599 CACAAGGCACAATCTGCTTTCTTCTTCACCCAAGACATCATTTCAATGGCATTGGAGAGA 1078658 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 | | | || | || ||||| || | || || | |||| ||| ||||| ||| Sbjct 1078659 AATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCAGAA 1078718 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 || |||||||| || || || || || || | ||||| | ||||| ||||||| ||| Sbjct 1078719 TGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAACC 1078778 Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG-GCAAAAAA 40038 ||| | ||||| | | ||| ||||||| | |||| ||||||| ||| |||| || Sbjct 1078779 TCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACATGCGTTCAAAGAA 1078838 Query 40039 TGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGAT 40098 || | |||||| ||||||||| ||| || || ||| | ||||| | | Sbjct 1078839 AGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTCCCAGTGCTGACT 1078898 Query 40099 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACAT 40158 || || || | ||| || || || |||||||| || || ||||| || || || ||||| Sbjct 1078899 GTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGAAGCCTCGGCTTTCTTATACAT 1078958 Query 40159 GTTCCATATATC 40170 | ||| ||||| Sbjct 1078959 TTGCCAAATATC 1078970 >seq13 Length=48154242 Score = 140 bits (154), Expect = 4e-28 Identities = 367/554 (66%), Gaps = 36/554 (6%) Strand=Plus/Minus Query 39604 TTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTT 39663 ||| |||||| ||||||| || |||| |||||||| ||||| | ||| | Sbjct 23470829 TTTGAACATTGAGCAGGCAAAATCAC-----------TCATCTCTGCTAATAAGTTCACT 23470781 Query 39664 AGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATAT--GGCAGCAAAA 39721 ||||||||||| |||||||| || | | || || ||||| ||||| | |||||| Sbjct 23470780 GGAAAATGTGAGACCAGGCATCAGCCATCATTTCTTAAGCCAGAATATACTGATGCAAAA 23470721 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781 || ||||||| |||||| |||| || ||||| || ||| |||| | || | Sbjct 23470720 GAACCAGAAAGGAAGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTTCACAAATA 23470661 Query 39782 GTATCATTATGTATCCACTTCTG-TGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGT 39840 | | | | |||| ||| | || |||| | ||||||||| ||||||||||| | Sbjct 23470660 G----ACTTTTTATC-----CTGATTCCAAATCTGTTTTCTTCTTCACACAAGGCATCAT 23470610 Query 39841 TTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAA 39900 ||| | |||| |||| | | | |||||| | || |||| ||| || | Sbjct 23470609 TTCAGTGCCATTGAAGATAAATTCTTTTTCTTTGGAATTTTTA----GTGTGATAATAAG 23470554 Query 39901 CAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCT 39960 | ||| |||||| | ||||| || ||| | || || || || ||||| || ||||| Sbjct 23470553 GAAACTGTACATTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTG 23470494 Query 39961 TGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCC 40020 ||||| |||||||| | ||| | |||| | | |||| |||||| | ||| | Sbjct 23470493 GGCTTCTGTAATTTGAATTTCTTGGCTAAATTGCTTCACCAATTTTTCACGTATTATGCT 23470434 Query 40021 ATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAA 40080 ||||| | || |||| |||| |||||| ||||||| | | || || | ||| Sbjct 23470433 ATCAC---CTGCTAAAA--GCCAGAACATGTGCTATAAAATCTCTCTCCTCAAGCTTCAG 23470379 Query 40081 TTTATTCCAGTCATTGATATCTT--TTGATATATCTACTTCTTCAGCTGTCCAAAACGAC 40138 | |||| |||| || || | | | |||||| || | | |||||||||| || Sbjct 23470378 GGCTTCCCAG-GGTTGA-ATGTTCCTGAAGAGATCTACCTCGTTAACTGTCCAAAAGGAA 23470321 Query 40139 GCCTCTGCCTTTTT 40152 ||||| || ||||| Sbjct 23470320 GCCTCAGCTTTTTT 23470307 >seq4 Length=67649338 Score = 129 bits (142), Expect = 8e-25 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| |||||||| || |||||| ||| | || || || ||||| || | Sbjct 16420953 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 16420894 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || ||||||||||||||||| ||||| ||||| |||||||| | || | | | Sbjct 16420893 TCAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCTGCTGCCATTTTGAGAACAGTTT 16420834 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | ||||||| ||| || || | ||||| |||| Sbjct 16420833 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTAAGGTCATCAGGAA 16420783 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || ||||| ||||| || ||||| | || Sbjct 16418166 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 16418107 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 16418106 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 16418047 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 16418046 TTTCTTACACCAT 16418034 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| |||||||| || || | || | ||||| ||||| || || || | Sbjct 16412760 GAACCCTCATAGGTTTCATATGGGCCATGCTCCTTTGCTAGGTCACAGCTGGCTTCCAGG 16412701 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| ||||| || |||| |||||| || || || ||| |||| || Sbjct 16412700 GCTCCATAATAAATAGTTTCAAAGATCTGCTTATTCAGTAACTGGGCCTCTGGACTCTCA 16412641 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || || || | || ||||| |||||||||| |||||||||||||| || ||||| Sbjct 16412640 AAAGGGTATCTCATCAGGATAAAAGCATCTGCCAGACCCTGAACCCCAATTCCAATAGGG 16412581 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 16412580 CGATGGCGTTTATTTGA 16412564 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| |||||||| ||||| || || || | || ||||| ||||| | Sbjct 16395540 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCA 16395481 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 || ||||||||||| || | ||||| | || || ||| |||| ||||| | |||| Sbjct 16395480 AGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAGAGTAT 16395421 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | || |||||||| | |||| ||||| || |||||||||| Sbjct 16395420 CTAGTTCCACTGTGGTAACTCCACTGTATAAGCCTTGGATTACTTTCATGG 16395370 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 || |||||||| || ||||| |||||||||||||| | || ||||| |||| || | Sbjct 16406665 ACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCGCTGC 16406606 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 || || |||||||| || || || | ||| || ||||| | || || ||||||| ||| Sbjct 16406605 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 16406546 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 16406545 TCCAGGTAAATAGC 16406532 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||| Sbjct 16407345 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 16407286 Query 69577 CA 69578 || Sbjct 16407285 CA 16407284 >seq7 Length=60492774 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || | Sbjct 54099246 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 54099305 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| || || || || ||||| | Sbjct 54099306 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 54099365 Query 39759 CAACAA 39764 | |||| Sbjct 54099366 CTACAA 54099371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTT 39326 ||||||||||| |||| || | |||| ||||||| | | ||||| |||||||| Sbjct 54097688 TTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCCATCC 54097747 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || || | ||||| || || ||||| || ||||| | ||| ||||| | Sbjct 54097748 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCT 54097807 Query 39387 CCATGAAATCAAACGGATT 39405 |||| || ||||| ||||| Sbjct 54097808 CCATAAAGTCAAATGGATT 54097826 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||||||| || || || || | |||||||||||||| ||||| |||||||| || || Sbjct 54101125 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 54101184 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || || || || || ||||| | |||||| |||||||| || ||| | ||||| ||| Sbjct 54101185 ATTTGGAAGCCATAGAAACAGCGTGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCC 54101244 Query 39998 GCC 40000 || Sbjct 54101245 ACC 54101247 >seq19 Length=38427206 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||||||||| |||||||| ||||| | ||| || Sbjct 3916227 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 3916286 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | ||| ||||| |||||||||||||| || ||||| || ||||| || || ||||| ||| Sbjct 3916287 AACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCA 3916346 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 3916347 ACCACTCTTTCCCC 3916360 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 40114 TACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173 ||| ||||| |||||||| || || |||| ||||| ||| ||||| ||||| |||||| | Sbjct 3927090 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 3927149 Query 40174 ATATTGTATTGGAAAAATAACAAATC 40199 || || ||||||||||| ||||||| Sbjct 3927150 GTACTGGATTGGAAAAATGACAAATC 3927175 >seq87 Length=7156779 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || || || || | ||||||||||||| ||||| |||||||| | || Sbjct 718051 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTTAGAATGCATGTTTTCTGTGGC 718110 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 | || || || || ||||| | |||| |||||||| || ||| | ||||| ||| Sbjct 718111 AACTTGGAAGCCATAGAAACAGCACACTTCTGTAATTTGAACTTCTTGGCTAAATCATTC 718170 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | ||||||||||||| ||| |||||||| || ||||| || |||| ||| | || Sbjct 718171 CACCAAATTTTCATTTGTTATGCCATCACTTGCTGCAAAGAAAGCCAGAACAAGCAATAT 718230 Query 40057 AAAATATTTTTCATCGGG 40074 ||||||| ||| || || Sbjct 718231 AAAATATCGTTCCTCAGG 718248 >seq25 Length=31340621 Score = 107 bits (118), Expect = 3e-18 Identities = 284/432 (66%), Gaps = 35/432 (8%) Strand=Plus/Minus Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCG 39661 ||||| ||||| | || ||| ||||| ||||| |||||| |||| ||||| | | Sbjct 4088122 TGTTTGAACATCATGCTGGCAAAGTCC--ATGTAAACCCTCACCTCTGCTAATAAGATTA 4088065 Query 39662 TTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAA 39721 || ||||| ||||| |||||| | || | || |||||||| ||||||| ||||| Sbjct 4088064 TTGGAAAAAGTGAGGTCAGGCACCAATCCT-GTTTCTTGAGCCAGAATATGGATTCAAAA 4088006 Query 39722 GATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTT 39781 || ||| | ||| | || ||||| | ||||| | ||| | | ||||| Sbjct 4088005 GAAGCAGGAGAGA---TTCCCTCTACAGAGGCAAAGGTTACACCTGT-TCTCC------- 4087957 Query 39782 GTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTT 39841 ||||| | ||||| | ||||||||||| | || ||||| Sbjct 4087956 ------------ATCCAATGAAAGGCCCAGGCTGCTTTCTTCTTCATACCAGGCA----- 4087914 Query 39842 TCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAAC 39901 || || | ||| |||||| | | | |||| | |||||||| | | || | Sbjct 4087913 TCAATGGTATTGAAGAGAAATTCTCTTTCTTTGGGATCTTTAATGGAAATGTCAGGAAGG 4087854 Query 39902 AGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA--CATC 39959 ||||||||| |||| ||||| |||||| | || || || || || || || | | || Sbjct 4087853 AGACTATACCTTTCAGAATGTATGTTTGCCATGGCAATTTGGAAGCCATAGATAGCAATG 4087794 Query 39960 TT--GCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT 40017 | ||||| |||||||| || ||| | ||||| ||| | ||| |||||||| ||||| Sbjct 4087793 GTGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCCTTCTGTCAACTTTTCATTTACTAT 4087734 Query 40018 TCCATCACTAGC 40029 |||| ||| || Sbjct 4087733 GCCATTACTTGC 4087722 >seq12166 Length=2209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTT 39326 ||||||||||| |||| || | |||| ||||||| | | ||||| |||||||| Sbjct 2055 TTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCCATCC 2114 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || || | ||||| || || ||||| || ||||| | ||| ||||| | Sbjct 2115 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCT 2174 Query 39387 CCATGAAATCAAACGGATT 39405 |||| || ||||| ||||| Sbjct 2175 CCATAAAGTCAAATGGATT 2193 >seq11 Length=52463945 Score = 84.2 bits (92), Expect = 3e-11 Identities = 177/262 (68%), Gaps = 9/262 (3%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTG 37397 ||| ||| |||| || || ||||| ||| | || || || ||| ||| | | | Sbjct 319200 TTAATTCTGTCCAGTAGAACCAAAACCTCCTGAACCCCTTTCAGTATCATTCAACACTAG 319141 Query 37398 TACTTCATTCAGATCAGGATAATATA-TACGTTGATAGATTAGCTGAGCTATTCTATCGC 37456 ||||| | | ||| |||||| | | | |||| | | || |||| |||||| ||| | Sbjct 319140 AACTTCTTCTATATCTGGATAAAAAAATCCGTTCACAAATGTGCTGTGCTATTTGATCAC 319081 Query 37457 CCGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCC 37516 || | |||| || ||| || ||| ||| ||| | || || |||| ||| | Sbjct 319080 CCTTTTTTACTTCAAACTTCTCTTTGCCAAAATTAA-----ATAACACCAACATTTTTTC 319026 Query 37517 TATAATCTTCATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCG 37573 ||||||||||||| || || || |||||||||| || | |||| || ||| || | Sbjct 319025 TATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAATATTTTGCAGCCAACCCAG 318966 Query 37574 ATCTAGGAGCTATTCTTCCATA 37595 | ||||||||||||||||| Sbjct 318965 AATGTGGAGCTATTCTTCCATA 318944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686783928566520