Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq67 257 1e-63 seq161 226 2e-54 seq58 127 2e-24 seq82 125 6e-24 seq87 122 7e-23 seq19 114 1e-20 seq7 113 4e-20 seq11 107 2e-18 seq151 86.0 5e-12 seq13 84.2 2e-11 >seq67 Length=10555288 Score = 257 bits (284), Expect = 1e-63 Identities = 600/894 (67%), Gaps = 36/894 (4%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||||||||| || | || || ||| ||||||| || | |||||||| Sbjct 3668012 TTTGTCATATTTCCAATTCAGTACCCCGATATTTGGAAAATGTATGAACAGGCACAGGCA 3668071 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA-CATTGGATTGCATT 43818 || || |||||||||||||| ||||| || | |||| | | || | || | Sbjct 3668072 TCCTTCTGGACAGCAGAAGAGGTTGACTTTATCAAAGGATCTCCTTCACTAGAACAAGCT 3668131 Query 43819 AAAACCACAAGAAAAACATTTT-------ATATCTTTGGTTTTGGCGTTTTTTGCTGCGA 43871 ||| || | || || ||||| ||||||| | |||| |||||||| | | Sbjct 3668132 TAAATCAGATGAGAATTATTTTCTCTCTCATATCTTAGCTTTT----TTTTTTGCAACCA 3668187 Query 43872 GCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAG 43931 | || || | | |||||||||||||| | ||| || || || ||| | ||| Sbjct 3668188 GTGATGGAAATGGAAATGAAAATTTGGTGGAGAGCTTTAGTCAGGAGGTGCAAGTTTCAG 3668247 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 | || | ||||| ||||| ||||||||| |||| | ||| |||| || | || |||| Sbjct 3668248 AGGCTTGCTGTTTCTATGGTTTTCAAATTCTCATAAAGAATGTTCACTCAAAGATATACA 3668307 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA---GCATCGATTGTTTAATG 44048 || | || |||||||| |||| |||| | | |||| | | || ||||||| Sbjct 3668308 GTTTGCTAATAGATACTAGAATCAGAGAT---CCCAAGAAAGGGAAATTTTTATTTAATG 3668364 Query 44049 CGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA-- 44105 | || ||||| | || | || |||| | ||| ||||||||||||| ||||||| Sbjct 3668365 CAATTAAAACAATGCCATACG-TTAAGAAAAAAACAGACTGGGCCCTGTGATGGATAGCA 3668423 Query 44106 -ATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGT--TGTGGAAGGCATTT 44162 || ||| | ||||||| ||| || | || || | |||| ||||||||| |||| Sbjct 3668424 GATAGAAAGTCTACTTTTGGGGAAAGAGTGGTGGCCAT--CAGTGCTGTGGAAGGAATTT 3668481 Query 44163 TCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGT 44222 |||| |||||||| ||||| || || || ||||||||||| ||||| || ||||| Sbjct 3668482 TCTTCTCAGGATCTTTTGCTGCTATTTTCTGGTTAAAGAAGAGAGGTCCCATCCCTGGAC 3668541 Query 44223 TGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCT 44282 | || |||| |||||| | || | | ||||||| | | | || ||||||||| Sbjct 3668542 TCACATTTTTCAATGAGCTGATCAACAGAGATGAAGAACTTCTCTATGACTTTGCTTGCC 3668601 Query 44283 TGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAA---TTACAGATATTG 44339 | | || || ||| | ||||| ||||| |||| || | | || || Sbjct 3668602 TAATGTTTCAGTACTTAGTA---AATAAGACTTCA--GAAGAAAAGGGTGAGGGAGATCA 3668656 Query 44340 TTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAA 44399 |||| | || || || || || || || ||| | ||| || || || || | | Sbjct 3668657 TTGTTAATGCTGTCAAAATTGAGCAGGAGTTTTTAACAGAAGACTTGCCAGTTGGCCTCA 3668716 Query 44400 TAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTT 44459 | | ||||| ||||||||| ||| |||||||||| | || || | |||||| Sbjct 3668717 TTAGGATGAACTGTGTTTTGATGAGCCAGTATATTGAATTTGTAGCTGAAAGATTACTTG 3668776 Query 44460 TGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATA 44519 ||||||| || | | || | | | | |||| || ||||||||||||||||| | Sbjct 3668777 TGGAACTTGGATTCTCAAAGGTTTTTCAGGCAGAAAATCCCTTTGATTTTATGGAAAACA 3668836 Query 44520 TTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGC 44573 |||| || || || |||||||| || |||| | ||| ||| ||| ||||||| Sbjct 3668837 TTTCTTTAGATGGGAAAACAAATTTCTTTG-AGAACAAGTTTCAGAGTATCAGC 3668889 >seq161 Length=830332 Score = 226 bits (250), Expect = 2e-54 Identities = 588/891 (66%), Gaps = 48/891 (5%) Strand=Plus/Minus Query 43709 TTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGG 43768 ||||| || |||| |||| || ||||| |||| || ||||| |||| || |||||| Sbjct 530667 TTTCCTATGGAATACCATGGTATCTGGCAGATGTGTAATAAAGCTGAGGCTTCCTTTTGG 530608 Query 43769 ACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCAC 43826 ||||| || || || | | | | | ||| | ||||| ||| || | || || Sbjct 530607 ACAGCCGAGGAGGTGGCTCTTCC-AGGGACATTCAGCAC--TGGGAAGCCCTGAAGCCTG 530551 Query 43827 AAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCA 43886 | ||| | |||||||||| || |||| || | ||| || || || || ||||| | Sbjct 530550 AGGAATGATATTTTATATCCCACTTTCTGGCTTTCTCTGCGGCAAGTGATGGCATAGTAA 530491 Query 43887 ATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTT 43946 |||| |||||||| || ||| |||||||||||| | ||||||| || |||| | Sbjct 530490 ATGAGAATTTGGTGGAGCGATTTAGCCAAGAAGTTCAAATTACAGAAGCCCGCAGTTTCT 530431 Query 43947 ATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATA 44006 |||| || ||||||||||| ||||| || ||||| |||||||| ||||| || || || | Sbjct 530430 ATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACA 530371 Query 44007 CGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTG 44066 | ||||| ||||| | || | | | | || ||||| || | |||| | ||| Sbjct 530370 CTTACATTAAAGACTCCAAAGAAAGGGAATTTCTCTTCAATGCCATTGTAACAATGCCTT 530311 Query 44067 CGATTAAACATAAAGCAGACTGGGCC-----CTTAAATGGATAAATTCAAATGATTCTTT 44121 | || | ||||| || |||||| || | ||| | | | | | | | | Sbjct 530310 GTGTGAAGAAGAAAGCCGATTGGGCCTTGCGTTTGATTGGGGACA--AAGAGGCTACCTA 530253 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGC 44181 ||||||||| |||| || ||||| | |||||| || || |||||||| ||| Sbjct 530252 TGGAGAACGTGTTGTAGCCTTTGCTGCTGTGGAGGGAATCTTCTTTTC---------TGC 530202 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 530201 --------------TCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACT 530156 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGG 44301 || || ||||| |||||||| || || ||||| ||| || | | | | || | Sbjct 530155 TATTAGCAAAGATGAGGGCTTACACTGTGACTTTGCCTGCCTGATGTTCAAACACCT-GC 530097 Query 44302 AGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGA 44361 | | || || ||| ||| | | | ||| | || | | || || | ||||| Sbjct 530096 TG--CACAAACCATCAGAGCAGAGAGTAAAAGAAACAATTATCAATGCTGTCACAATAGA 530039 Query 44362 ACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA-TGAACTTTTGA 44420 ||| | || | ||| ||| || |||| || |||| || ||||| || || ||||| Sbjct 530038 ACAGGCGTTCCTCACAGAAGCCTTGCCTGAGAAGCTAATTGGGATGAATTGCAC-TTTGA 529980 Query 44421 TGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAAC 44480 |||| || || ||||| | | |||||| | | | |||| ||||| | | ||| Sbjct 529979 TGAAGCAGTACATTGACTTTGTGGCAGATAGGCTTATGCTGGAGCTGGGCT----TTAAC 529924 Query 44481 ACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAA 44536 | | || ||| |||| || ||||| |||||||| |||||||| | ||||| || Sbjct 529923 AAGGTTTTCAAAGTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTAGAAGGGAAG 529864 Query 44537 ACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || ||||| ||||| || | || || | |||||| | ||||| || ||| Sbjct 529863 ACTAACTTCTTTGAGAAGAGAGTAGGCAAGTATCAGAGGATGGGAGTGATG 529813 >seq58 Length=13050397 Score = 127 bits (140), Expect = 2e-24 Identities = 615/959 (64%), Gaps = 43/959 (4%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||| || ||| ||||| || ||||| || | || || || | | Sbjct 9036639 TTTGTCTTCTTTCCTATCAGATACCATGATATTTGGCAGATTTCTAAGAAGGCTGAAGGT 9036580 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||| ||||| ||| | || | | | | || ||| | | | | | || | Sbjct 9036579 TCCTTTTTGACAGAAGAGGTGGTAGCTATTTCCAAGGACATTCTATACTAGGAAGCCCTG 9036520 Query 43820 AAACCACAAGAAAAACATTTTATATCTT-TGGTTTTGGCGTTTTTTGCTGCGAGCGACGG 43878 ||| | | | | | ||||||| ||| | || || || ||||| || || || || Sbjct 9036519 AAATCTGAGGTATGATATTTTATGTCTCATAATTATGAATTTCTTTGCAGCAAGTGATGG 9036460 Query 43879 GATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC 43937 ||| | |||||||||||||| ||| | || || ||||||||| | |||||| | Sbjct 9036459 CATAATAAATGAAAATTTGGTGGAGTGATTAAGC-CAGGAAGTTCAAATTACAGAAGTTC 9036401 Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997 ||||| |||| || ||||||||||| ||||| | |||| |||||||| ||||| | Sbjct 9036400 ACTGTTTCTATGACTTCCAAATTGCCATGGAAAA-CTACATTGTGAAATGTATAGTCTCC 9036342 Query 43998 TGATAGATACGTACA----TCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA 44053 | || || || || | ||||||| | | ||| || | || ||||| || Sbjct 9036341 TTATTGACACTTAAAGATTTCAAAGA-----AAGGGAA-TTTC---TCTTCAATGCCATT 9036291 Query 44054 GAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCA 44110 |||||| ||||| | || | |||| | | | || | | | ||||| | | Sbjct 9036290 GAAACAATACCTTATGTAAAGAAGAAAGTAAATTAGGTCTTGCATTGGATTGGGGACAAA 9036231 Query 44111 AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 | | | | | ||||| | |||| || ||||| | ||||||||| | ||||| | Sbjct 9036230 GAAGCTACCTACAGAGAATGTGTTGTAGCCTTTGCCGCTGTGGAAGGAAACTTCTTCTAT 9036171 Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 | || |||| | ||||| | ||| |||||| | || ||||||||||| | | || Sbjct 9036170 GTTTCTTTTGAATCAATATTCTAGTTCAAGAAATGGGGATTGATGCCTGGCCTAA--GTT 9036113 Query 44231 TCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTT 44290 || | ||| | || || | ||||| || |||| ||| || | ||| ||| || | | Sbjct 9036112 TCCAGTGAACTTATTAGCAGAGATGAGGGTTTACTTTGTGACTCTGCCTGCCTGATGTTC 9036053 Query 44291 GGATATCTAGGAGACGATAAGCCTTCATGTA--AGACAATTACAGATATTGTTGTAGAGG 44348 | | || | || | || || | || | ||| | | | ||| || || | | | Sbjct 9036052 AAACACCT--GCTAC-ACAAACCAT--TGGAGCAGAGAGTAAAAGAAATATTTATCAATG 9035998 Query 44349 CAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGA 44408 | || | ||||||| || || | | || || ||||| || || | || |||| Sbjct 9035997 CTGTCAGCTTAGAACAGGAGTTCCTCATGGAGGCCTTGCCTGTGAAGTTCACTGGGATGA 9035938 Query 44409 A-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTG 44467 | || || ||||||||| || |||||||||| | | ||||| | | | || | ||| Sbjct 9035937 ACTGCAC-TTTGATGAAGCAGTATATTGAATTCGTGGCAGACAGGCTTATGATGAAGCTG 9035879 Query 44468 GGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTC 44523 || | | | || | || ||| |||| || | ||| |||||||| |||||||| Sbjct 9035878 GGCT----TTAGCAAGGTTTTCAGAGTAGAAAATCCATCTGACTTTATGGAGAATATTTC 9035823 Query 44524 GTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGT 44583 |||| ||| | ||||| ||||| || || || || |||||| | ||||| | Sbjct 9035822 -ACAGAAGACAAGATTAACTTCTTTGAGAAGAAAGTAGGTGAGTATCAGAGGATGGGAGA 9035764 Query 44584 CATGATAA---CAAGTGACAATAAATTTACTACGGATGAAGATTTCTAATTAATCAGAA 44639 ||| || ||| | ||| ||||| ||||| ||||||||| | | ||||| Sbjct 9035763 GATGTCAAATCCAACAGGGAATTCTTTTACCTTGGATGCTGATTTCTAAATGAACAGAA 9035705 >seq82 Length=7573503 Score = 125 bits (138), Expect = 6e-24 Identities = 224/324 (69%), Gaps = 5/324 (2%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||| | ||||| | || | || || || || ||||||||||| || ||||| |||| Sbjct 1078997 TTTGCCATGTTTGCTATCAATTACCACGATATTTGGCAAATGTATAAGAAAGCCGAGGCT 1078938 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCACATTGGATTGCAT 43817 || || |||||||| || || || ||| | | || ||| | ||||| ||| || Sbjct 1078937 TCCTTCTGGACAGCGGAGGAGGTGGATCTTTCCAAGGACAGTCAGCAC--TGGGAGGCCC 1078880 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCT-GCGAGCGAC 43876 | || || | ||| | |||||||||| ||| | || || |||| || | || Sbjct 1078879 TGAAGCCTGAGGAATGATATTTTATATCACATGTTCTAGCTTTCTTTGAACGCATGTGAT 1078820 Query 43877 GGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCA 43936 || |||| | ||||||| |||| || ||| ||||| |||||| | |||||| Sbjct 1078819 GGCATAGCAAGTGAAAATCTGGTGCAGCGATTTAGCCAAGAGGTTCAAATTATAGAAGCC 1078760 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 | ||||| | ||| || ||||||||||| ||||| || ||||| ||||| || |||| Sbjct 1078759 GGCTGTTTCTGTGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATATATGGTCTC 1078700 Query 43997 CTGATAGATACGTACATCAAAGAT 44020 || || || | ||||| ||| || Sbjct 1078699 CTTATTGACATTTACATTAAAAAT 1078676 >seq87 Length=7156779 Score = 122 bits (134), Expect = 7e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 43836 ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATT 43895 ||||||||| | ||| |||| || ||||| || || || || ||| |||||||||| Sbjct 718235 ATTTTATATTGCTTGTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAACAAATGAAAATT 718176 Query 43896 TGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTC 43955 |||| | ||| |||||||||||| | |||||| | ||||| ||||| || | Sbjct 718175 TGGTGGAATGATTTAGCCAAGAAGTTCAAATTACAGAAGTGTGCTGTTTCTATGGCTTCC 718116 Query 43956 AAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCA 44015 || |||||| |||||| || ||||| ||||||| ||||| || || || || ||||| | Sbjct 718115 AAGTTGCCACAGAAAACATGCATTCTAAAATGTATAGTCTCCTTATTGACACTTACATTA 718056 Query 44016 AAGAT 44020 ||||| Sbjct 718055 AAGAT 718051 >seq19 Length=38427206 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||| || | || || ||||| | ||||||||| |||||||| |||||||| ||||| Sbjct 3916360 GGGGAAAGAGTGGTTGCCTTTGCTGCTGTGGAAGGAATTTTCTTCTCAGGATCTTTTGCT 3916301 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 || ||||| ||||||||||| ||||| | ||||||||| | || ||||| ||||| | Sbjct 3916300 GCTATATTCTGGTTAAAGAAGAGAGGTCTCATGCCTGGGCTCACATTTTCCAATGAACTG 3916241 Query 44243 ATAAGTCGTGATGAAG 44258 || || | ||||||| Sbjct 3916240 ATCAGCAGAGATGAAG 3916225 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 3902939 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 3902880 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 |||| ||| ||| |||||||| | | ||| ||| ||| | || ||| || | Sbjct 3902879 AACGAGTTTCAGAGTATCAGCGTTTTGCCGTTATGGCAGAAACCACAGATAATGTCTTCA 3902820 Query 44610 CTACGGATGAAGATTTCTAA 44629 || ||||| |||||| ||| Sbjct 3902819 CTTTGGATGCAGATTTTTAA 3902800 >seq7 Length=60492774 Score = 113 bits (124), Expect = 4e-20 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||||||||| ||||| ||||| || ||||||||||| ||||| Sbjct 54101231 CAAGAAGTTCAAATTACAGAAGCACGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 54101172 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || ||||| |||||||| ||||| || || || || ||||| ||||| Sbjct 54101171 ATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGA 54101125 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| |||| || ||||| | |||||| || || |||||||| || || ||||| Sbjct 54099381 GGAGAACGTGTTGTAGCCTTTGCTGCTGTGGAGGGAATCTTCTTTTCTGGTTCTTTTGCA 54099322 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 54099321 TCAATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 54099262 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 54099261 ATTAGCAGAGATGA 54099248 >seq11 Length=52463945 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| || || ||| | || ||||| ||||| ||||| || |||| Sbjct 43836346 TGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAATGGGGAGCTGT 43836405 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || || |||||||||||||| || || || || || ||||| || | Sbjct 43836406 CCTGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTTCAACATCGCCA 43836465 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| ||||| || || |||||||||||| Sbjct 43836466 GCTATGCCCTGCTTACCTACATGATTGCACAC 43836497 >seq151 Length=1038780 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 158905 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 158846 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | |||||| ||||||||||| ||||| || | ||||| ||| | Sbjct 158845 AGCATGGCTGGTAGCACTGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATT 158786 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 ||||| || | || ||||| ||||| | || ||||| ||| Sbjct 158785 GACGGGGTAGAACAGCTGAACAATATCCTTGTCATTGGTATG 158744 >seq13 Length=48154242 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 43888 TGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 |||||| ||||| | | ||| |||||| ||||| | ||||||| | ||||| || Sbjct 23470445 TGAAAAATTGGTGAAGCAATTTAGCCAAGAAATTCAAATTACAGAAGCCCACTGTTTCTA 23470504 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 ||| || ||||||||||||| ||| || ||||| | |||||||||| | || || Sbjct 23470505 TGGATTCCAAATTGCCATAGGAAAAATACATTCTGTAATGTACAGTTTCCTTAT 23470558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397385553780715