Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq11 84.2 2e-11 >seq11 Length=52463945 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||||||||||||||| || || || || || || ||||| || ||||| Sbjct 43836505 CCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCGATGTTGAAGGGCACG 43836446 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || |||||||| || || || || || || ||||| || || || | | ||| Sbjct 43836445 CCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACG 43836386 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || |||| || ||||||| ||||||| Sbjct 43836385 TAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATC 43836347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391876130459509