Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq83 149 7e-31 seq9 145 9e-30 seq2 138 1e-27 seq25 132 5e-26 seq91 125 8e-24 seq30 123 3e-23 seq16 104 3e-17 seq1 96.9 4e-15 seq4 89.7 6e-13 seq43 86.0 7e-12 >seq83 Length=7591375 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 |||||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | Sbjct 413810 ATAATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCC 413869 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| | ||||| ||| | ||||| || || || ||||||||||| || || || ||| Sbjct 413870 AGTGACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGAC 413929 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||| | | || ||||| || ||||| || || || | || ||||| | ||||| Sbjct 413930 CAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTAC 413989 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || || ||||||| | ||||| Sbjct 413990 AACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGTCTCAGAGGTGG 414039 Score = 136 bits (150), Expect = 5e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | || Sbjct 414041 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 414100 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || ||||||||||| || || || |||||| Sbjct 414101 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAG 414160 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || ||||| || || || | || ||||| | ||||| || Sbjct 414161 CAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAAC 414220 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||| ||||| ||||| || || || || |||| Sbjct 414221 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 414255 >seq9 Length=54061371 Score = 145 bits (160), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAG 27463 |||||| |||||| | ||||| || || ||||||||||| || || ||| | ||| ||| Sbjct 30845224 AATGCAGATCTTTATGAAGACCCTGACTGGCAAGACTATCACCCTGGAGATGGAGCTCA- 30845282 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| | ||||| ||| |||||||||| || ||||| || || || |||||||| |||| Sbjct 30845283 GTGACACCATTGAGAATGTGAAGGCTAAGATCCAGGATAAAGAAGGCATTCCTCCTGACC 30845342 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | || || ||||| || |||| || || |||| || || || | ||||| | Sbjct 30845343 AGCAGAGGCTCATCTTTGCAGGCAAGCTGCTGGAAGATGGCCGCACTCTTTCTGACTACA 30845402 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| || || ||||| || || || ||| | | ||| | ||||| Sbjct 30845403 ACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTTCCTCTGAGGGGTGG 30845451 >seq2 Length=69027483 Score = 138 bits (152), Expect = 1e-27 Identities = 166/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| || || || || || ||||| | ||||||||||| | |||||||| | | Sbjct 23646103 TGCAGATTTTCGTAAAAACCCTTACAGAGAAGACTATTACAATGGAGGTTGAACCCTCGG 23646162 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 ||| || | |||| | ||||| || || ||||| ||||| ||||||||||| || || | Sbjct 23646163 ATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCATC 23646222 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 | | || || ||||||| ||||||||| || |||| |||||| | | ||||| || Sbjct 23646223 AAAGACTGATGTTTGCTGATAAGCAACTGGAAGATGGACGTACCGTGTCTGACTACAACA 23646282 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| ||||||| || || | ||||| ||||| Sbjct 23646283 TTCAGAAGGAGTCCACCCTTCATCAGGTGCTGAGGCTTCGTGGTGG 23646328 >seq25 Length=31340621 Score = 132 bits (146), Expect = 5e-26 Identities = 165/225 (73%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || ||||| || ||||||| ||| || |||||||| | Sbjct 4762909 ATGCAGATTTTTGTAAAAACCCTTACAGGGAAGACTAATACACTCGAGGTTGAACCCTCG 4762850 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || || ||||| ||||| | ||||||||| || ||| Sbjct 4762849 GACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAG-AATTCCTCCTGATCAG 4762791 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||||||||||||||| || |||| ||||| | | ||||| || Sbjct 4762790 CAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 4762731 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 | || ||||| ||||| |||||||| || || | ||| | ||| Sbjct 4762730 ATTCAGAAGGAGTCCACCCTTCATCTTGTGCTGAGGCTTTGTGGT 4762686 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||| ||| | || Sbjct 6808218 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 6808277 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | || || |||||||| ||||||||||| Sbjct 6808278 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGG 6808321 >seq91 Length=6382753 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | || || |||| || |||||||||||||| |||||||| | Sbjct 364402 ATGCAGATTTTCTTAAAAACCCTTATGGGGAAGACTATTACTCTCGAGGTTGAACCCTCC 364343 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 | | || | |||| | || || || || ||| | ||||| ||||||||||| || ||| Sbjct 364342 AACACTATAGAAAATGTAAAAGCCAAGATCCAGAATAAGGAAGGAATTCCTCCTGATCAG 364283 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | |||| || ||||||||||||||||| || |||| |||||| | | ||||| | Sbjct 364282 TAAAGTCTCATCTTTGCTGGTAAGCAACTAGAAGATGGACGTACCTTGTCTGACTACGAC 364223 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||| ||||| |||||||| || || | |||| ||||| Sbjct 364222 ATTTAGAAGGAGTCCACCCTTCATCTTGTTCTGAGGCTTCATGGTGG 364176 >seq30 Length=30016984 Score = 123 bits (136), Expect = 3e-23 Identities = 148/200 (74%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || |||| ||| | || Sbjct 13544296 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCAAGGTCGAGCCCAGT 13544355 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || ||| |||| |||| |||||| || | || || || Sbjct 13544356 GACACCATCGAGAATGTCAAAGCGAAATTTCAAGACATGGAGGGCATCTCACCTGAT-AG 13544414 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| || ||||| ||||| || || ||||||| || || || |||| || || Sbjct 13544415 CAGCATCTGATATTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCCCAGATTACAAC 13544474 Query 27586 GTCCAAAAGGAATCCACTCT 27605 |||| || ||||||||||| Sbjct 13544475 ATCCAGAAAGAATCCACTCT 13544494 >seq16 Length=44863414 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || ||||| | |||||| ||| || |||| ||| | Sbjct 42573940 ATGCAGATTTTCGTAAAAACCCTTACGAGGAAGACTGTTATGCTGGAGGCTGAACCCTCG 42573881 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || || ||||| ||||| ||||||||||| || ||| Sbjct 42573880 GACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 42573821 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||||||||||||||| || |||| |||| | | ||| | | Sbjct 42573820 CAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGATGTACTTTGTCTGACCACAGC 42573761 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| | |||||| | || | |||| ||||| Sbjct 42573760 ATTCAGAAGGAGTCCACCCCTCATCTTATGCTGAGGCTTCATGGTGG 42573714 >seq1 Length=90267253 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/200 (71%), Gaps = 16/200 (8%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || ||||||||||| || |||||||| | | || || | |||| | ||||| || Sbjct 20659365 GGGAAGACTATTACGCTCGAGGTTGAACCTCG-GACCCTATAGAAAATGTAAAGGCCAAG 20659423 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||| ||||| ||| ||||||| || |||||| | || || ||||||||||||||| Sbjct 20659424 ATCCAGGATAAGGAAGGA-TTCCTCCTGATCAGCAGAGACTGATCTTTGCTGGTAAGCAA 20659482 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || || |||| ||||| || | || ||||| ||||| |||||||| Sbjct 20659483 CTGGAAGATG--------------GACTACAACATTCAGAAGGAGTCCACCCTTCATCTT 20659528 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || || | || | ||||| Sbjct 20659529 GTGCTGAGGGTTTGTGGTGG 20659548 >seq4 Length=67649338 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | || || |||| || ||||| || | ||||||||||| || Sbjct 3346866 ATGCAGATTTTCATAAAAACCCTTATGGGGAAGACCATCATGCTTGAGGTTGAACCACTG 3346807 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || || || | || ||||| ||||||||||| | ||| Sbjct 3346806 GATACTATAGAAAATGTAAAAGCCAAGATCTAAGATAAGGAAGGAATTCCTCCCAATCAG 3346747 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||| ||||||||||| | || |||| ||| || | ||||| || Sbjct 3346746 CAAAAACTAATCTTTTCTGGTAAGCAAATGGAAGATGGGTGTA-TTTATCTGACTACAAC 3346688 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 | || ||||| || || || ||||| Sbjct 3346687 ATTCAGAAGGAGTCTACCCTCCATCT 3346662 Score = 86.0 bits (94), Expect = 7e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 80944 GTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGG 81003 ||| |||| || ||||| ||||||| || |||| || || |||||||| | |||| Sbjct 16408272 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGG 16408213 Query 81004 TTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGT 81063 || ||| || |||| || |||||| ||||||||||||||| ||||| ||| Sbjct 16408212 TTGCTCTTCCGATTACAAGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTGA 16408153 Query 81064 GACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCG 81110 |||| | |||||| | ||||| || | || || || || ||||| Sbjct 16408152 GACTCAATGATGGCATACCAAAGCTGCTGAGCTTTTACAACTTTGCG 16408106 >seq43 Length=18332749 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACT-CGAGCC 32183 ||||| |||| | |||||||| ||||| ||| ||||| |||||| | | | | || Sbjct 17965746 ACCATCATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAACCC 17965805 Query 32184 ATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 || ||| |||||||| ||||| || |||||||||||| |||| ||| | || ||||| Sbjct 17965806 AT-TGGTCAGTTTGGTACCCGCCTACATGGTGGCAAGGATTCTGCTAGCCCTCGATACAT 17965864 Query 32244 CTTCAC 32249 |||||| Sbjct 17965865 CTTCAC 17965870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570206724698160