Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 5e-14 seq11 84.2 3e-11 >seq1 Length=90267253 Score = 93.3 bits (102), Expect = 5e-14 Identities = 184/271 (68%), Gaps = 1/271 (0%) Strand=Plus/Plus Query 22664 TTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTACTAAA 22723 |||| | || || ||||||| | ||| ||||| ||||| | ||| || || | ||| Sbjct 47431152 TTCACAAATGAGCTGTGCTATTTGATCACCCTTTTTTACTTCAAACTTTTCTTTGCCAAA 47431211 Query 22724 ATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATC-TATCACACCCGCGCCTA 22782 ||||||||| | | ||| | |||||| || |||| | |||| ||| ||||| || | || Sbjct 47431212 ATTAAATAATACAACACCAACATTTCCTCTATAATTTTTATCTTATGACACCAGCTCTTA 47431271 Query 22783 CATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATATAATCCTT 22842 ||||||| || || || ||||| || | | |||| || ||||||||| | || Sbjct 47431272 CATCGATGAAGTGTTTTGCAGCCAAGCCAGGACGTGGAGCTACTCTTCCATAACACCCAG 47431331 Query 22843 CCGGTATATCTATTATAATATCAGTCATTACTAATTGTTTACCCATAGGTTCTATTACGT 22902 || | | |||| || || || | || | ||| |||||||| ||||| | Sbjct 47431332 AAGGAAGAGCTATCTGAACGTCTGTTTTCACAAGGGCTTTCTCCATAGGTGGTATTATAT 47431391 Query 22903 AATTATACGCGCTATATAGATCATATCCTGC 22933 ||| | | || | || || ||||| ||||| Sbjct 47431392 AATCACAAGCACCTTACAGGTCATAGCCTGC 47431422 >seq11 Length=52463945 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 5/171 (3%) Strand=Plus/Minus Query 22664 TTCAAATATAAGTTGTGCTACTCTATCGCCCTTATTTACGTAAAATACATCCTTACTAAA 22723 |||| | || | ||||||| | ||| ||||| ||||| | ||| || || | ||| Sbjct 319109 TTCACAAATGTGCTGTGCTATTTGATCACCCTTTTTTACTTCAAACTTCTCTTTGCCAAA 319050 Query 22724 ATTAAATAACAATATACCTATATTTCCCCTGTAATCTCTATCTATCACACCCGCGCCTAC 22783 ||||||||||| || | |||| || |||||| |||||| ||||| || ||||| Sbjct 319049 ATTAAATAACA-----CCAACATTTTTTCTATAATCTTCATCTATGACACCAGCTCCTAC 318995 Query 22784 ATCGATAAAATGATTACATGCCAATCCCGATCTAGGAGATATTCTTCCATA 22834 ||| || |||| || ||||| || || |||| |||||||||||| Sbjct 318994 ATCTATGAAATATTTTGCAGCCAACCCAGAATGTGGAGCTATTCTTCCATA 318944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603071149270320