Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq83 120 2e-22 >seq83 Length=7591375 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| ||||| || || ||| |||||| || ||||| || || || Sbjct 414039 CCACCTCTGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 413980 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| ||||||| || || || |||||||| || || | ||| ||||| || || Sbjct 413979 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 413920 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| |||| || | || || | ||| ||||| | |||||| Sbjct 413919 ATGCCCTCCTTGTCTTGGATC-TTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 413861 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || | || ||||| || |||||||| Sbjct 413860 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 413813 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 |||| ||||| || || ||| |||||| || ||||| || || || || || ||| || Sbjct 414255 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCG 414196 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| || || || |||||||| || || | ||| ||||| || || | ||||||||| Sbjct 414195 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTG 414136 Query 34612 TCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 ||| |||| || | || || | ||| ||||| | |||||| |||| ||| || Sbjct 414135 TCTTGGATC-TTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 414077 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || | || ||||| || |||||||| Sbjct 414076 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314673816440519