Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq138 111 1e-19 seq25 89.7 4e-13 seq9 87.8 2e-12 seq2 84.2 2e-11 seq1035 82.4 7e-11 seq108 82.4 7e-11 seq30 82.4 7e-11 >seq138 Length=1287892 Score = 111 bits (122), Expect = 1e-19 Identities = 173/247 (70%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 26972 TTTTAATTTATACGCCA---TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTAC 27028 |||||| || || | || ||||||| ||||| || || ||||| |||||| | || || Sbjct 343645 TTTTAAATTCTAGGTCAAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCAC 343586 Query 27029 TCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGA 27088 || || ||||| || ||| | ||||||| || || || || || || ||||| Sbjct 343585 CCTGGAGGTGGAGCCCAGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGA 343526 Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 |||||| || || || || ||| | | || | || ||||| || |||||||| | Sbjct 343525 AGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGCCG 343466 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || |||| |||||||| || || || ||||| ||| | || |||| | ||| || | Sbjct 343465 TACTCTTTCTGATTACAATATCCAGAAAGAGTCCACCCTGCACCTGGTCCTTCGTCTGAG 343406 Query 27209 GGGTGGC 27215 ||||||| Sbjct 343405 GGGTGGC 343399 >seq25 Length=31340621 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || || || ||| ||| ||| || || || ||||| || Sbjct 4762909 ATGCAGATTTTTGTAAAAACCCTTACAGGGAAGACTAATACACTCGAGGTTGAACCCTCG 4762850 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || || || ||| | || || || ||||| Sbjct 4762849 GACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAA-GAATTCCTCCTGATCAG 4762791 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || || ||| ||||||| | || | || || |||||| Sbjct 4762790 CAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 4762731 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 ||||| |||||||| ||| | ||| Sbjct 4762730 ATTCAGAAGGAGTCCACCCTTCAT 4762707 >seq9 Length=54061371 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||| | || || ||||| |||||| |||| || || || |||| | Sbjct 30845225 ATGCAGATCTTTATGAAGACCCTGACTGGCAAGACTATCACCCTGGAGATGGAGCTCAGT 30845284 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || || ||||||||||| || || || || Sbjct 30845285 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 30845344 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| | ||||||| | || |||| || |||||| Sbjct 30845345 CAGAGGCTCATCTTTGCAGGCAAGCTGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 30845404 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || ||||| ||| | || |||| | | | || |||||||| Sbjct 30845405 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTTCCTCTGAGGGGTGGC 30845452 >seq2 Length=69027483 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 ||||||| || |||||||| || || | ||| ||||||| | || || ||||| || | Sbjct 23646103 TGCAGATTTTCGTAAAAACCCTTACAGAGAAGACTATTACAATGGAGGTTGAACCCTCGG 23646162 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 | | || || | || || || || || || || ||||| || || || ||||| | Sbjct 23646163 ATACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCATC 23646222 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 | | | || | || | || ||| ||||||| | ||||| || || ||||||| Sbjct 23646223 AAAGACTGATGTTTGCTGATAAGCAACTGGAAGATGGACGTACCGTGTCTGACTACAACA 23646282 Query 27169 TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||| |||||||| ||| | ||| ||| || | | || ||||| Sbjct 23646283 TTCAGAAGGAGTCCACCCTTCATCAGGTGCTGAGGCTTCGTGGTGG 23646328 >seq1035 Length=9571 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || ||| |||| || ||| | || ||| | ||||| ||| | || ||| | ||| Sbjct 155 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 96 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || |||||||| ||||| || ||||| || ||||| | || Sbjct 95 GACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 36 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGT 27146 || | || || || |||||||||||| || Sbjct 35 ATCTTTGCTGGTAAGCAATTGGAAGACGGT 6 >seq108 Length=3381964 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| | ||| | || | | ||| || || || Sbjct 512047 ATGCAGATCTTTGTGAAGACTCTGACAGTTAAGACCATCTCCCATGAGGTTGAGCCCAGT 511988 Query 27048 GACTCGATT-GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | | || |||| |||||| ||||||||||| || || |||| |||| || || Sbjct 511987 GA-TAGCTTCGAGAATGTCAAAGCCAAAATTCAAGAGAAGGACAGCATTACACCTGACCA 511929 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||| || |||| | |||||||| |||| ||| | | || | || ||||||| Sbjct 511928 ACAGTGTCAGATATTTGTGGGCAAACAGCTGGAGGACGGCCCCACTCTCTCACATTACAA 511869 Query 27167 CATTCAAAAGGAGTCGACCTTACATTT 27193 ||| || || ||||| ||| | || || Sbjct 511868 CATCCAGAAAGAGTCCACCCTGCACTT 511842 >seq30 Length=30016984 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || | || || || Sbjct 13544296 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCAAGGTCGAGCCCAGT 13544355 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||| ||||||||| || ||||| |||| ||| | Sbjct 13544356 GACACCATCGAGAATGTCAAAGCGAAATTTCAAGACATGGAGGGCATCTCACCTGAT-AG 13544414 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| | | |||| || || ||||| |||| || | || | | ||||||||| Sbjct 13544415 CAGCATCTGATATTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCCCAGATTACAAC 13544474 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || || || | ||||| | | || | |||||||| Sbjct 13544475 ATCCAGAAAGAATCCACTCTATACTTGGTGCTTCACCTGAGAGGTGGCAT 13544524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434839337271360