Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq13 176 4e-39 seq78 152 5e-32 seq11 150 2e-31 >seq13 Length=48154242 Score = 176 bits (194), Expect = 4e-39 Identities = 275/390 (71%), Gaps = 4/390 (1%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||| ||||| | || || ||| || | ||||| || || |||| ||| Sbjct 3963749 ATTTTGAGCTTTGGGAAAGCTCTTGGTTCTTGTAGAAGCTGAATTTTCAGTGGCTCAATG 3963808 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || |||||||| | ||| |||| ||| || | ||||| | | | | || || Sbjct 3963809 TGATTCAGGTAAAAATGTGCATTCCCAAA-GAATGCATAAAGTTATCTGACTGCAGGTCC 3963867 Query 6614 ACGACATGAGCGATCATGTACG-TGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCC 6672 || || | |||||||| | | ||||| || || | | |||||||| ||||| || Sbjct 3963868 GTGATGTGTGTAATCATGTAAGGTAAGCAGGGCATAGCACTCGATGTTGAAAGGCACGCC 3963927 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732 || |||||| |||| || | ||| || ||| |||||||||||||||||| | ||| Sbjct 3963928 CAAGCCCATGACTCCTGACCTTTGGTACAGCCAACAGGACAGCTCCCCATTCAC--TGTA 3963985 Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792 ||| ||||||| || ||||| || || ||| |||||||||| | ||| || || ||||| Sbjct 3963986 GAACTGGCAGAAGGCATGGCATGGAGGCAGCACCATCAGAGGAAAATCTTTTGGTTTCCA 3964045 Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTG 6852 | ||||| | ||| |||||||| |||||||| || | ||||| |||||| | || Sbjct 3964046 AACACACATGATGATTCTTCTGTCTTCAGGGTTGGTTTTGATGGTGTTGATCACTTTTTG 3964105 Query 6853 CAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882 || ||| | |||| || | ||||| || Sbjct 3964106 AAGTTGGCCTACTCCTTGATCAGAATAATC 3964135 Score = 176 bits (194), Expect = 4e-39 Identities = 275/390 (71%), Gaps = 4/390 (1%) Strand=Plus/Minus Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || ||||| | || |||| | ||| || || | |||||| ||||| | || ||| Sbjct 3964135 GATTATTCTGATCAAGGAGTAGGCCAACTTCAAAAAGTGATCAACACCATCAAAACCAAC 3964076 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 ||||| |||||||| ||| | ||||| | ||||| || || ||| | |||||||||| | Sbjct 3964075 CCTGAAGACAGAAGAATCATCATGTGTGTTTGGAAACCAAAAGATTTTCCTCTGATGGTG 3964016 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAG 34642 || || || ||||| || ||||||| |||||| | |||||||||||||||||| | Sbjct 3964015 CTGCCTCCATGCCATGCCTTCTGCCAGTTCTACA--GTGAATGGGGAGCTGTCCTGTTGG 3963958 Query 34643 CTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCT 34702 || || ||| | || |||| |||||| || || ||||| |||||||| | | || || Sbjct 3963957 CTGTACCAAAGGTCAGGAGTCATGGGCTTGGGCGTGCCTTTCAACATCGAGTGCTATGCC 3963898 Query 34703 CTGCTCA-CGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATAC 34761 ||||| | | |||||||| | || || || || | | | | ||||| | Sbjct 3963897 CTGCTTACCTTACATGATTACACACATCACGGACCTGCAGTCAGATAACTTTATGCATTC 3963838 Query 34762 GTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACG 34821 || ||| |||| ||| | |||||||| ||||| |||| || || ||||| | || Sbjct 3963837 -TTTGGGAATGCACATTTTTACCTGAATCACATTGAGCCACTGAAAATTCAGCTTCTACA 3963779 Query 34822 AGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 ||| || || | ||||| |||||||||| Sbjct 3963778 AGAACCAAGAGCTTTCCCAAAGCTCAAAAT 3963749 >seq78 Length=8086754 Score = 152 bits (168), Expect = 5e-32 Identities = 420/640 (66%), Gaps = 9/640 (1%) Strand=Plus/Plus Query 34221 TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGT 34280 |||| |||||||| || ||| |||| | |||||| || || | |||||| |||| || | Sbjct 259569 TTCCTCTGCTGACAACCAAATGTGTATTCTGGAATGGTGTTTTGGAGGAGTTGCTATGAT 259628 Query 34281 TCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACG 34340 | | | ||| |||| || | || || || | ||| ||| | || ||||||||| Sbjct 259629 TTATCAAGGGATCCACAAATGCTAAAGAACTATATTCCAAGGGACTAAACATCTGGGACA 259688 Query 34341 CTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACT 34400 | | | |||| || |||| ||| | ||| ||| | | | | || | ||| Sbjct 259689 CCAATGCATCTCAAGCCTTTTGGGATGGCCTGGGATTCTCCACCAGAAAAGAAAGGGACC 259748 Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460 | | ||| || || || ||||||| |||||| ||| || | | | | | Sbjct 259749 TAGACCCAGTTTATGGCTTCCAGTAGAGACATTTTTAGGTACAACACAAAGATATGGTTT 259808 Query 34461 CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGA 34520 | | ||||| | || |||| ||| |||| | ||||| |||||| | || | Sbjct 259809 CAGGTTATTCTGATCAAGGAGTAGAC----TGCAAAAAGTGATTGACACCATCAAAACCA 259864 Query 34521 ACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCT---GA 34577 | ||||| | |||||| || | ||||| | | ||| || || ||| | |||| || Sbjct 259865 ATCCTGAGGCCAGAAGAATTATCATGTGTGTTTAGAAACCAAAAGATTTTCCTCAAAAGA 259924 Query 34578 TGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCT 34637 | || || || ||||| | |||||||| |||||| | ||||||| ||||||||| Sbjct 259925 TTTTCCTGCCTCCATGCCATGCTCTCTGCCAGTTCTACAAGGTGAATGGG-AGCTGTCCT 259983 Query 34638 GCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTT 34697 || ||| || || |||| |||| |||||| || || |||| |||| ||||| || | Sbjct 259984 GCTGGCTGTACCATAGATCAGGAGTCATGGGCTTGGGCATGCCTTTCAGCATTGAGAGCT 260043 Query 34698 ACGCTCTGCTCA-CGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTG 34756 | || ||||| | | || ||| | || | || || || || | ||| | || Sbjct 260044 ATGCCCTGCTTACCTTATATGGTTGCATACATCAGGGACCTGCAGCCAGTGGACTTTATG 260103 Query 34757 CATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTG 34816 ||| | ||| | ||||| ||||| || || || ||||| |||| || || ||||| Sbjct 260104 CATTCTTTGAGAGATGCACATATTTAACTAAATCACATTGAGCCACTGAAAATTCAGCTT 260163 Query 34817 CAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTC 34856 | | |||| || || | || || ||||||||||| ||| Sbjct 260164 CTATGAGAACCAAGAGCTTTACCAAAGCTCAAAATTCTTC 260203 Score = 152 bits (168), Expect = 5e-32 Identities = 420/640 (66%), Gaps = 9/640 (1%) Strand=Plus/Minus Query 6489 GAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCT 6548 ||| ||||||||||| || || | || || |||| | | ||||| || || ||| Sbjct 260203 GAAGAATTTTGAGCTTTGGTAAAGCTCTTGGTTCTCATAGAAGCTGAATTTTCAGTGGCT 260144 Query 6549 CGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA 6608 | ||||| || || || ||||| ||||| | ||| | ||||| | ||| | || || Sbjct 260143 CAATGTGATTTAGTTAAATATGTGCATCTCTCAAAGAATGCATAAAGTCCACTGGCTGCA 260084 Query 6609 ACCCCACGACATGAGCGATCATGTACG-TGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667 || || | || | ||| || | | ||||| || || || ||||| |||| ||| Sbjct 260083 GGTCCCTGATGTATGCAACCATATAAGGTAAGCAGGGCATAGCTCTCAATGCTGAAAGGC 260024 Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG 6727 | || || |||||| |||| |||| || || ||| ||||||||||| ||||||| | Sbjct 260023 ATGCCCAAGCCCATGACTCCTGATCTATGGTACAGCCAGCAGGACAGCT-CCCATTCACC 259965 Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATC---AGAGGGAGATCCTTC 6784 |||||| |||||||| | ||||| || || || ||| |||| | ||| || Sbjct 259964 TTGTAGAACTGGCAGAGAGCATGGCATGGAGGCAGGAAAATCTTTTGAGGAAAATCTTTT 259905 Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844 || ||| | | ||||| | || |||||| | ||||| || || | |||||| ||| Sbjct 259904 GGTTTCTAAACACACATGATAATTCTTCTGGCCTCAGGATTGGTTTTGATGGTGTCAATC 259845 Query 6845 ACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCC 6904 || | |||| ||| |||| || | ||||| | | | | | | | Sbjct 259844 ACTTTTTGCA----GTCTACTCCTTGATCAGAATAACCTGAAACCATATCTTTGTGTTGT 259789 Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 || ||| |||||| ||||||| || || || ||| | | ||| | || | | | Sbjct 259788 ACCTAAAAATGTCTCTACTGGAAGCCATAAACTGGGTCTAGGTCCCTTTCTTTTCTGGTG 259729 Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 | ||| ||| | ||| |||| || |||| | | | ||||||||| || | ||| Sbjct 259728 GAGAATCCCAGGCCATCCCAAAAGGCTTGAGATGCATTGGTGTCCCAGATGTTTAGTCCC 259669 Query 7025 CGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACC 7084 ||| | || || || | || |||| ||| | | || || |||| |||||| | Sbjct 259668 TTGGAATATAGTTCTTTAGCATTTGTGGATCCCTTGATAAATCATAGCAACTCCTCCAAA 259609 Query 7085 ACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAA 7124 || || |||||| | |||| ||| || |||||||| |||| Sbjct 259608 ACACCATTCCAGAATACACATTTGGTTGTCAGCAGAGGAA 259569 >seq11 Length=52463945 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || || ||||| |||||||||| |||||||| | |||| Sbjct 43836336 GATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAAT 43836395 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||||| || || | || || |||||||| | || ||||| ||| Sbjct 43836396 GGGGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTTC 43836455 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || ||||| || |||||||| || || Sbjct 43836456 AACATCGCCAGCTATGCCCTGCTTACCTACATGATTGCACA 43836496 Score = 150 bits (166), Expect = 2e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| || ||||| || || || || |||||||| ||||| || | ||| Sbjct 43836496 TGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCCC 43836437 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || | || || |||||||||||||||||||||||| | |||||||| ||| Sbjct 43836436 ATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 43836377 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || ||||||||||| ||||| Sbjct 43836376 CAGAGGGCATGGCATGGAGGCAGTGCCATCAGAGGAAGATC 43836336 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| ||| ||||| |||||||| || | || |||| Sbjct 43833450 CCACAAATGCTAAAGAACTATCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCTC 43833509 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 ||| |||| |||| | ||| ||| | | | | || || ||| ||||||| |||| Sbjct 43833510 GAGGCTTTTTGGATGGCCTGGGATTCTCCACCAGACAAGAAGGGGACCTGGGCCCAGTCT 43833569 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| |||||||| || || Sbjct 43833570 ATGGCTTCCAGTGGAGACATTTTGGGGCAGAATA 43833603 Score = 89.7 bits (98), Expect = 5e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| |||||||||||||| || ||||| ||||||| ||| || || | Sbjct 43833603 TATTCTGCCCCAAAATGTCTCCACTGGAAGCCATAGACTGGGCCCAGGTCCCCTTCTTGT 43833544 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| | |||| |||| ||||||| || | || |||||||| ||| Sbjct 43833543 CTGGTGGAGAATCCCAGGCCATCCAAAAAGCCTCGAGATCCATTGGCATCCCAGATTTTC 43833484 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || || || || | || |||| Sbjct 43833483 ACTCCCTTGGAAGATAGTTCTTTAGCATTTGTGG 43833450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 || ||||| || || |||| ||||| ||||| | ||||| |||||| | || ||| Sbjct 43835495 GATTATTCTGGTCAAGGAGTAGACCAACTGCAAAAAGTGATTGACACCATCAAAACCAAC 43835554 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 |||||||||||||||||| | ||||| || |||||||| || Sbjct 43835555 CCTGATGACAGAAGGATCATCATGTGTGCCTGGAACCCAAA 43835595 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| || ||||| | ||||||||||||||||||||| || | |||||| Sbjct 43835595 TTTGGGTTCCAGGCACACATGATGATCCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 43835536 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTC 6882 ||||| | ||||| ||||| |||| || || ||||| || Sbjct 43835535 ATCACTTTTTGCAGTTGGTCTACTCCTTGACCAGAATAATC 43835495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448180911498960