Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq5 174 1e-38 seq11 122 7e-23 >seq5 Length=64221397 Score = 174 bits (192), Expect = 1e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| || || ||||||||||||||||| || | || | Sbjct 7194304 ATTGTGACATGGCAGAAAAAAAAGGCTGTAAGCCCAGAAAACATGGTTACCTACAGCAGG 7194245 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 |||| |||||||| || ||||| || ||| | | | | ||||||| || ||||| ||| Sbjct 7194244 AACCATGGGGTTGTGGTCCAGCCCGCCTACCAGGGCAGAGTGAACATCACCGAGCTGGGA 7194185 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || || ||| |||| || ||||||||||||||||| |||| || || |||||||||| | Sbjct 7194184 CTCCAGAACTCAACCATCACCTTCTGGAACACAACGCTGGAGGACGAGGGGTGCTACATG 7194125 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || ||||| ||| | ||||||||||| || |||| || || || ||||| Sbjct 7194124 TGTCTCTTCAACACCTTTAGTTCTGGGAAGATCTCGGGAACAGCCTGCCTCACCCT 7194069 >seq11 Length=52463945 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 6973717 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 6973776 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 6973777 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 6973836 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 6973837 ATCGCCCTGTGGATGACTGA 6973856 Score = 93.3 bits (102), Expect = 3e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || |||||||| | || || || Sbjct 43836508 AGGCCCGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCGATGTTGAAGGGC 43836449 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| |||||||| |||| |||||||||| ||||| || |||||||| || | Sbjct 43836448 ACGCCCAGGCCCATGTCACCTGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 43836389 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || || ||||| | | | || ||||||||||| |||| Sbjct 43836388 ACGTAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 43836348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414403336966252