Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq138 176 1e-38 seq9 174 4e-38 seq25 167 5e-36 seq91 154 3e-32 seq83 145 2e-29 seq2 141 2e-28 seq17 140 8e-28 seq16 140 8e-28 seq14 114 3e-20 seq1 111 4e-19 seq1035 109 1e-18 seq30 109 1e-18 seq108 93.3 1e-13 seq34 93.3 1e-13 >seq138 Length=1287892 Score = 176 bits (194), Expect = 1e-38 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||||||||| ||||| || ||||| | ||| || | |||||| Sbjct 343415 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTACGGCCATCT 343474 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||||||||| ||||| || | || |||||||| |||| ||||| || ||| Sbjct 343475 TCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 343534 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | || ||||| || ||||| ||| Sbjct 343535 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 343594 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | ||||||||| Sbjct 343595 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 343629 >seq9 Length=54061371 Score = 174 bits (192), Expect = 4e-38 Identities = 170/217 (78%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||||||||| |||||||| || || | ||| || | |||||| Sbjct 30845436 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 30845377 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||| |||||||||| ||||| || | || ||||||||||||| ||||| || ||| Sbjct 30845376 TCCAGCAGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 30845317 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATCG 211080 |||||||| ||||| || || ||||||||| |||| || | ||| || ||||| | Sbjct 30845316 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGAGC--TCCATCTCCAGGGTGATAG 30845259 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||| || || || ||||| | ||| | ||||||||| Sbjct 30845258 TCTTGCCAGTCAGGGTCTTCATAAAGATCTGCATTTT 30845222 >seq25 Length=31340621 Score = 167 bits (184), Expect = 5e-36 Identities = 171/222 (77%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || ||| || || ||||| ||||| |||||||| || || ||||| || || | | || Sbjct 4762689 ACAAAGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGT 4762748 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| ||||| || || ||||| || | ||| || |||||||||| | | Sbjct 4762749 ACGTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAA-TTC 4762807 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| ||| || ||||| || ||||| ||| |||||||||||| Sbjct 4762808 TTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAG 4762867 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||||| || || || || |||||||| | |||||| Sbjct 4762868 TGTATTAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 4762909 >seq91 Length=6382753 Score = 154 bits (170), Expect = 3e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 |||| || || ||||| ||||| |||||||| || | |||| || || | | ||| | Sbjct 364183 GAAGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTCGTAGTCAGACAAGGTAC 364242 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 ||||||||| || ||||| || || ||||| || | || || |||||||||| ||||| Sbjct 364243 GTCCATCTTCTAGTTGCTTACCAGCAAAGATGAGACTTTACTGATCAGGAGGAATTCCTT 364302 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 |||| | ||||||||| ||| || ||||| || |||| ||| |||||||||||||| Sbjct 364303 CCTTATTCTGGATCTTGGCTTTTACATTTTCTATAGTGTTGGAGGGTTCAACCTCGAGAG 364362 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || ||||| ||| | || || |||| || | |||||| Sbjct 364363 TAATAGTCTTCCCCATAAGGGTTTTTAAGAAAATCTGCAT 364402 >seq83 Length=7591375 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | || ||| Sbjct 414024 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 413965 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || ||||| || || | || |||||||| Sbjct 413964 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCT 413905 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || ||||| || ||||| ||| Sbjct 413904 TGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 413845 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTTATGGTTAC 211125 || ||||| || ||||| || || | ||||||| | | ||||| Sbjct 413844 TTGCCCGTCAGGGTCTTCACGAAGATCTGCATTATCTAGTTAC 413802 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | || ||| Sbjct 414252 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 414193 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| | | || ||||| || || | || |||||||| Sbjct 414192 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCT 414133 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || ||||| || ||||| ||| Sbjct 414132 TGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 414073 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 414072 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 >seq2 Length=69027483 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| || || || | ||||| |||||||| || || ||||| || || | | ||| Sbjct 23646323 ACGAAGCCTCAGCACCTGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACACGGT 23646264 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| ||||| | || || || || | ||| || |||||||||| ||| Sbjct 23646263 ACGTCCATCTTCCAGTTGCTTATCAGCAAACATCAGTCTTTGATGATCAGGAGGAATTCC 23646204 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||||| || || || ||| ||||||||| | Sbjct 23646203 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTATCCGAGGGTTCAACCTCCAT 23646144 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 || || ||||| | || || || ||||| || | ||||| Sbjct 23646143 TGTAATAGTCTTCTCTGTAAGGGTTTTTACGAAAATCTGCA 23646103 >seq17 Length=43943611 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||||||||| |||||||| || || | ||| || | |||||| Sbjct 21311337 AGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 21311396 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||| ||||| || || || | || |||||||| |||| ||||| | ||| Sbjct 21311397 TCCAGCTGCTCCCCTGCAAATATGAGTCTCTGCTGGTCAGGGGGAATGCCTTCTGTATCC 21311456 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||| ||||| | || ||||| || ||| | ||| Sbjct 21311457 TGGATCTTGGCCTTCACATTCTCAATGATGTCATTGGGCTCCACCTCCAGGGTGGTGGTC 21311516 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || ||||| | |||||||| Sbjct 21311517 TTGCCAGTCAGGGTTTTCACAAAGATGTGCATTTT 21311551 >seq16 Length=44863414 Score = 140 bits (154), Expect = 8e-28 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 |||| || || | ||| ||| | |||||||| || || ||| | | || | | || | Sbjct 42573721 GAAGCCTCAGCATAAGATGAGGGGTGGACTCCTTCTGAATGCTGTGGTCAGACAAAGTAC 42573780 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 |||||||||||| ||||| || || ||||| || | ||| || |||||||||| ||||| Sbjct 42573781 ATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTT 42573840 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 |||| ||||||||||| ||| || ||||| || ||||| ||| |||| |||| || Sbjct 42573841 CCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCCAGCA 42573900 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | | ||||| | ||| || || ||||| || | |||||| Sbjct 42573901 TAACAGTCTTCCTCGTAAGGGTTTTTACGAAAATCTGCAT 42573940 >seq14 Length=48072881 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| | | |||||||| ||||||||||| || ||| | | |||||| Sbjct 43570275 AGGACCAGGTGCTGGGCTGACTCTTTCTGGATGTTATAGTCAAAAAGAATGCAGCCATCT 43570334 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||| |||| ||||| || | || |||||||| |||| | | | ||| ||| Sbjct 43570335 TCCAGCTGCTTGACTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAAATACCTTCTTATCC 43570394 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 |||||||| ||||| || || ||||||||| Sbjct 43570395 TGGATCTTAGCTTTCATATTCTCAATGGTGTCA 43570427 >seq1 Length=90267253 Score = 111 bits (122), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 16/188 (9%) Strand=Plus/Minus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 || || ||||| ||||| |||||||| || || ||||| || ||| | Sbjct 20659536 CTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCC--------------A 20659491 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 |||||||| ||||| || || ||||| || | || || |||||||||| ||||||||| Sbjct 20659490 TCTTCCAGTTGCTTACCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAA-TCCTTCCTTA 20659432 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 ||||||||||| || || ||||| || | ||| ||| |||||||||||| || || Sbjct 20659431 TCCTGGATCTTGGCCTTTACATTTTCTATAGGGTCCGAG-GTTCAACCTCGAGCGTAATA 20659373 Query 211080 GTCTTTCC 211087 ||||| || Sbjct 20659372 GTCTTCCC 20659365 >seq1035 Length=9571 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210951 GTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT 211010 || || || ||||||| ||||| || || ||||| | | |||||||||||| || | Sbjct 1 GTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATA 60 Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||| |||||||| || || || || ||||||||||| |||||| || Sbjct 61 CCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCC 120 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 | |||||| ||||| || || | |||||| || || Sbjct 121 AAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 155 >seq30 Length=30016984 Score = 109 bits (120), Expect = 1e-18 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 210915 AGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTG 210974 |||||||| ||||| |||||||| ||||| | || || | ||||| |||||||| || Sbjct 13544494 AGAGTGGATTCTTTCTGGATGTTGTAATCTGGGAGAGTGCGGCCATCCTCCAGCTGTTTA 13544435 Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| || || || | || | ||||| | | || ||| |||| || | || | Sbjct 13544434 CCTGCAAATATCAGATGCTGCTA-TCAGGTGAGATGCCCTCCATGTCTTGAAATTTCGCT 13544376 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||||||| | || |||| ||| ||||| ||||| || || || Sbjct 13544375 TTGACATTCTCGATGGTGTCACTGGGCTCGACCTTGAGGGTGATGGTCTTGCCTGTCAGG 13544316 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | |||||| Sbjct 13544315 GTCTTCACAAAGATCTGCAT 13544296 >seq108 Length=3381964 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || ||||||||||| |||||||| |||| | || || || || |||||||| Sbjct 511844 GTGCAGGGTGGACTCTTTCTGGATGTTGTAATGTGAGAGAGTGGGGCCGTCCTCCAGCTG 511903 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| | || || | | ||||||||||| | || | ||||| || || || || Sbjct 511904 TTTGCCCACAAATATCTGACACTGTTGGTCAGGTGTAATGCTGTCCTTCTCTTGAATTTT 511963 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || || |||| | | ||| | |||||||| | | ||| ||||| | || Sbjct 511964 GGCTTTGACATTCTCGAAGCTATCACTGGGCTCAACCTCATGGGAGATGGTCTTAACTGT 512023 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| | |||||| Sbjct 512024 CAGAGTCTTCACAAAGATCTGCAT 512047 >seq34 Length=22531781 Score = 93.3 bits (102), Expect = 1e-13 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | | ||||| |||||||||||| ||||| ||||| || | | | || Sbjct 4178329 ACGAAGTCTCAATATAAGGTAAAGAGTGGACTCCTTTTGAATGTTGTAGTGAGACAAAGT 4178388 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| | | |||| || ||||| || | ||| || | |||||||| || Sbjct 4178389 GCATCCATCTTCCAGTTTCCTGCCAGCAAAGATTAGCCTTTGCTGATGAGGAGGAATGCC 4178448 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGT 211051 || | |||||| |||| || || ||||| || || Sbjct 4178449 TTTTATATCCTGGGTCTTGGCCTTTACATTTTCTATAGT 4178487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158936012672195