Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq83 104 2e-17 seq25 100 2e-16 seq91 87.8 1e-12 seq138 86.0 4e-12 seq16 86.0 4e-12 >seq83 Length=7591375 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||||| ||||| || || ||||| || || || || ||| Sbjct 413812 AATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 413871 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | || | | ||||| || || | || || || | Sbjct 413872 TGACACCATTGAGAATGTCAAGGCGAAGA-TCCAAGACAAGGAGGGCATCCCCCCCGACC 413930 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||||||||| || |||||||||| ||||| | ||| |||| Sbjct 413931 AGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACA 413990 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || |||||||| Sbjct 413991 ACATCCAGAAGGAGTCCAC 414009 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||| || || || || ||| Sbjct 414041 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 414100 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| || || | || || || || Sbjct 414101 GACACCATTGAGAATGTCAAGGCGAAGA-TCCAAGACAAGGAGGGCATCCCCCCCGACCA 414159 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||||||||| || |||||||||| ||||| | ||| ||||| Sbjct 414160 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCCGACTACAA 414219 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 414220 CATCCAGAAGGAGTCCAC 414237 >seq25 Length=31340621 Score = 100 bits (110), Expect = 2e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || |||||||| || || || || | || ||||| ||||| || || Sbjct 4762909 ATGCAGATTTTTGTAAAAACCCTTACAGGGAAGACTAATACACTCGAGGTTGAACCCTCG 4762850 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| ||||| || || || || ||| | | || || ||||| Sbjct 4762849 GACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAA-GAATTCCTCCTGATCAG 4762791 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || || ||||||||||| | ||| ||||| || |||||| Sbjct 4762790 CAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 4762731 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 4762730 ATTCAGAAGGAGTCCAC 4762714 >seq91 Length=6382753 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||| | |||||||| | ||| || || || |||||||| ||||| || | Sbjct 364402 ATGCAGATTTTCTTAAAAACCCTTATGGGGAAGACTATTACTCTCGAGGTTGAACCCTCC 364343 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| ||||| || || | || ||||| | || || ||||| Sbjct 364342 AACACTATAGAAAATGTAAAAGCCAAGATCCAGAATAAGGAAGGAATTCCTCCTGATCAG 364283 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 | || | || ||||| || || ||||| ||||| | ||| || || || ||| || Sbjct 364282 TAAAGTCTCATCTTTGCTGGTAAGCAACTAGAAGATGGACGTACCTTGTCTGACTACGAC 364223 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGG 23826 || | || |||||||| | ||| | ||| | ||| Sbjct 364222 ATTTAGAAGGAGTCCACCCTTCATCTTGTTCTGAGG 364187 >seq138 Length=1287892 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||||| || || || || ||||| || || || || || Sbjct 343629 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCC 343570 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || | | || |||||||| | || || || Sbjct 343569 AGTGACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGATAAAGAAGGCATTCCCCCTGA 343511 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | || ||||| ||||| || ||||||| | || ||| | ||||| Sbjct 343510 CCAGCAGAGGCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGCCGTACTCTTTCTGATTA 343451 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || || ||||||||||| Sbjct 343450 CAATATCCAGAAAGAGTCCAC 343430 >seq16 Length=44863414 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| ||| | || || | | || || | ||| || || Sbjct 42573940 ATGCAGATTTTCGTAAAAACCCTTACGAGGAAGACTGTTATGCTGGAGGCTGAACCCTCG 42573881 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| ||||| || || || || ||||| | || || ||||| Sbjct 42573880 GACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 42573821 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | | || ||||| || || ||||||||||| | | | ||||| || ||| | Sbjct 42573820 CAAAGACTGATCTTTGCTGGTAAGCAACTGGAAGATGGATGTACTTTGTCTGACCACAGC 42573761 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 42573760 ATTCAGAAGGAGTCCAC 42573744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337949690227844