Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq83 138 3e-27 seq1035 127 5e-24 seq91 113 1e-19 seq11 104 6e-17 seq4 100 7e-16 seq6 95.1 3e-14 seq1433 91.5 4e-13 seq14543 86.0 1e-11 seq34 84.2 5e-11 >seq83 Length=7591375 Score = 138 bits (152), Expect = 3e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||| || || |||| ||||| |||| || || | ||| || Sbjct 414025 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 413966 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| | | || |||||||| || || || |||||||| Sbjct 413965 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 413906 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| || |||||||| || ||||| || | ||||| || Sbjct 413905 TTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 413846 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATGGTTAC 225724 ||||||||||| || || | ||| | |||||| | | ||||| Sbjct 413845 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTATCTAGTTAC 413802 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || ||||| || ||||| || || |||| ||||| |||| || || | ||| || Sbjct 414253 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTC 414194 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || || ||||| | | || |||||||| || || || |||||||| Sbjct 414193 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 414134 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| || |||||||| || ||||| || | ||||| || Sbjct 414133 TTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 414074 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | ||||| Sbjct 414073 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 >seq1035 Length=9571 Score = 127 bits (140), Expect = 5e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 225550 GTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATA 225609 ||||| || ||||| | ||||| ||||| ||||| | || ||||||||| || || ||| Sbjct 1 GTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATA 60 Query 225610 CCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 |||||||||||||||||||| ||| ||| || |||||||| || | ||| || || Sbjct 61 CCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCC 120 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| ||||| || |||||||| || | ||| Sbjct 121 AAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 155 >seq91 Length=6382753 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 225494 GAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTC 225553 |||| ||||| ||||| || || ||||| || || | | | ||| || | ||| || | Sbjct 364183 GAAGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTCGTAGTCAGACAAGGTAC 364242 Query 225554 TCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTT 225613 ||||||||||| ||||| ||||| ||||| || | || || || || ||||| |||| Sbjct 364243 GTCCATCTTCTAGTTGCTTACCAGCAAAGATGAGACTTTACTGATCAGGAGGAATTCCTT 364302 Query 225614 CCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACG 225673 |||| | |||||||| || ||| ||| || |||| |||| ||| || || | | Sbjct 364303 CCTTATTCTGGATCTTGGCTTTTACATTTTCTATAGTGTTGGAGGGTTCAACCTCGAGAG 364362 Query 225674 TGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || ||||| ||| | | ||||||| ||| | ||||| Sbjct 364363 TAATAGTCTTCCCCATAAGGGTTTTTAAGAAAATCTGCAT 364402 >seq11 Length=52463945 Score = 104 bits (114), Expect = 6e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || ||| | || ||| ||| |||||||||||||||||||||| Sbjct 21247365 CACTTCAGTACCTGGCTCCTTACTCTGGCTGTTCTATGGGAGAATATTTTAGAGATAATG 21247424 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACA 5116 | ||||||||||| |||||||| ||||| ||| ||||| Sbjct 21247425 GCAAACATGCTTTGATCATCTATGATGACTTATCCAAACA 21247464 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||| || |||||||| || || || |||||||| || || |||||||| |||||||| Sbjct 21247799 AATACCTGTCCATCAGTGATGGAAATGACATTTGTTGGAATGTAAGCAGACACATCACCA 21247740 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 || |||||||| | || ||||| || || | || |||||||||||| Sbjct 21247739 GCCTGTGTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCACCAAAA 21247692 >seq4 Length=67649338 Score = 100 bits (110), Expect = 7e-16 Identities = 156/222 (70%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 || ||| || || |||| ||||| || || || || || | ||||| || | ||| | Sbjct 3346646 ACAAAGCCTTAGCCCAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAGTCAGATAAA-T 3346704 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||| | ||||| |||| ||||| ||| ||| || | ||| ||||| || Sbjct 3346705 ACACCCATCTTCCATTTGCTTACCAGAAAAGATTAGTTTTTGCTGATTGGGAGGAATTCC 3346764 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| |||| |||||| || ||| ||| || || || | ||| || || | Sbjct 3346765 TTCCTTATCTTAGATCTTGGCTTTTACATTTTCTATAGTATCCAGTGGTTCAACCTCAAG 3346824 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||| ||||| ||| | | ||||||||||| | ||||| Sbjct 3346825 CATGATGGTCTTCCCCATAAGGGTTTTTATGAAAATCTGCAT 3346866 >seq6 Length=63159690 Score = 95.1 bits (104), Expect = 3e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||||||||| |||||||| || |||||||| || || || | Sbjct 29688465 TTCGGGATGCCCAAAAAATCAGAATAAGTGTTGATATAGAATAGGATCTCCACCTCCAGC 29688406 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATT 370758 ||||||||||| ||||||||| ||| Sbjct 29688405 AGGATCAAAAAATGTAGTATTAAGATT 29688379 >seq1433 Length=6645 Score = 91.5 bits (100), Expect = 4e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || |||||||| || || |||||||| || |||||||| Sbjct 1745 GAAAATTTGACCATCGGTAATGGAAATAACATTGGTTGGAATATAAGCGGAGACATCACC 1686 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCA 4569 |||| ||||| | |||||| || || |||| || ||| Sbjct 1685 ACCTTGGGTTTCAATAACAGGCAAAGCAGTTAAAGAACCA 1646 >seq14543 Length=16433 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||||||||| |||||||| | |||||||| || || || | Sbjct 6070 TTCAGGGTGCCCAAAAAATCAGAATAAGTGTTGATATAAAATAGGATCTCCACCTCCAGC 6011 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATT 370758 || |||||||| ||||||||| ||| Sbjct 6010 AGGGTCAAAAAATGTAGTATTAAGATT 5984 >seq34 Length=22531781 Score = 84.2 bits (92), Expect = 5e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| | ||||| |||||||| || ||||| | ||||| | | |||||| Sbjct 4178329 ACGAAGTCTCAATATAAGGTAAAGAGTGGACTCCTTTTGAATGTTGTAGTGAGACAAAGT 4178388 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || | | | ||||| ||||| || | ||| || | || ||||| || Sbjct 4178389 GCATCCATCTTCCAGTTTCCTGCCAGCAAAGATTAGCCTTTGCTGATGAGGAGGAATGCC 4178448 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 || | || ||| |||| ||| ||| ||| || || | |||| Sbjct 4178449 TTTTATATCCTGGGTCTTGGCCTTTACATTTTCTATAGTATTTGAG 4178494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192308993052842