Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq67 306 3e-78 seq161 237 1e-57 seq58 179 3e-40 seq82 134 1e-26 seq1 116 3e-21 seq7 102 7e-17 seq19 93.3 4e-14 seq11 86.0 5e-12 >seq67 Length=10555288 Score = 306 bits (338), Expect = 3e-78 Identities = 608/886 (69%), Gaps = 22/886 (2%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||| | || || |||||||| ||||| || ||||| ||||| |||||| Sbjct 3668887 TGATACTCTGAAACTTG-TTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCC 3668829 Query 4320 ATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTA-GAGCTACAAGCAA 4378 ||||||||||| ||||| ||| | | || ||| | | | | | | ||||| || Sbjct 3668828 ATAAAATCAAAGGGATTTTCTGCCT-GAAAAACCTTTGAGAATCCAAGTTCCACAAGTAA 3668770 Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || |||||||||||||| |||||||||||||| | | ||||| || | ||| | | Sbjct 3668769 TCTTTCAGCTACAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 3668710 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 || || | | | ||| |||||||| || || || | || || | || || || Sbjct 3668709 AACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTC 3668650 Query 4499 TTTTATT-TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAAT 4557 | | || |||| || | |||||||||||||| ||||| || || ||||| | Sbjct 3668649 CCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAAGT 3668590 Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 || | | | |||| |||||| | ||||| || || |||| || | ||| || || Sbjct 3668589 CATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATGG 3668530 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 ||||||||| || | ||| || ||||| ||||| || || || ||||| || ||||| | Sbjct 3668529 GACCTCTCTTCTTTAACCAGAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCA 3668470 Query 4678 CGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA--ATCCATTT 4735 | || | || || | || ||| || || | |||| | | | |||||| Sbjct 3668469 CAGCACTGATGGCCACCACTCTTTCCCCAAA--AGTAGACTTTCTATCTGCTATCCATCA 3668412 Query 4736 TAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAAT---AA 4792 | ||||||| | ||||||||||||| | || ||||| | || || |||||| || Sbjct 3668411 CAGGGCCCAGTCTGTTTTTTTCTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAA 3668352 Query 4793 TTTACTTTTTTCAAATGGG-TCT-TGAATATAAGTGTCTATTAGTAGGCTATACATTTCA 4850 ||| | ||| | |||| ||| ||| | | ||| |||||||| | || || || | Sbjct 3668351 TTTCCCTTTCT----TGGGATCTCTGATTCT-AGTATCTATTAGCAAACTGTATATCTTT 3668297 Query 4851 GAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGA 4910 || || | ||| | ||| ||| ||||| || || || || | ||| |||| ||||| Sbjct 3668296 GAGTGAACATTCTTTATGAGAATTTGAAAACCATAGAAACAGCAAGCCTCTGAAACTTGC 3668237 Query 4911 ACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC---A 4967 || || | || ||| || || || || ||||| ||| | | || ||||||| ||| | Sbjct 3668236 ACCTCCTGACTAAAGCTCTCCACCAAATTTTCATTTCCATTTCCATCACTGGTTGCAAAA 3668177 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGG 5027 ||||| || || | |||||| | ||| || | || || | ||||| || ||| |||| Sbjct 3668176 AAAAAAGCTAAGATATGAGAGAGAAAATAATTCTCATCTGATTTAAGCTTGTTCTAGTGA 3668117 Query 5028 GGCAAATCTTTAGTTAAA-TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 | | ||| || | |||| ||||| ||||| | ||||| || || || | || | || Sbjct 3668116 AGGAGATCCTTTGATAAAGTCAACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTC 3668057 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAAT 5132 ||||| ||||||||| || |||||||| |||| |||||||||| Sbjct 3668056 ATACATTTTCCAAATATCGGGGTACTGAATTGGAAATATGACAAAT 3668011 >seq161 Length=830332 Score = 237 bits (262), Expect = 1e-57 Identities = 570/860 (66%), Gaps = 42/860 (5%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 ||||| ||| || ||||| ||||| || ||||||| |||||||| |||||||| ||||| Sbjct 529840 TACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCCATAAAGTCAAA 529899 Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG----AGCTACAAGCAATCGGTCAG 4386 ||||| | | ||| || || | | | || ||| | |||| | || | Sbjct 529900 TGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTCCAGC-ATAAGC---CTATCTG 529955 Query 4387 CTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTA 4446 | ||||| || || ||||| |||| | ||| || || ||||||| || |||| | Sbjct 529956 CCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTTCTCAGGCA 530015 Query 4447 GCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTT 4506 || | ||| | ||| | |||||||| || || || | | ||| | ||||||| | Sbjct 530016 AGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCATTGATAATTGTTTCTTTTACTC 530075 Query 4507 TATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCA 4566 | | | |||||||| | | | || | |||| | || ||||| ||||| || | Sbjct 530076 TCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAGTGTA 530135 Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 | || || ||| ||||||| ||||| || ||||| || | || ||||| | |||| | Sbjct 530136 AGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTT 530195 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || ||| ||||||||| || || || || || |||| Sbjct 530196 TCTTGAGC-----------------------AGAAAAGAAGATTCCCTCCACAGCAGCAA 530232 Query 4687 ACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAG 4745 | ||||| | || || | | ||| ||||||| |||| | || ||||| Sbjct 530233 AGGCTACAACACGTTCTCCATAGGTAGCCT-CTTTGTCCCCAATCAAACGCAAGGCCCAA 530291 Query 4746 TTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---ATTTACTTTTT 4802 | ||||| ||||| || || || ||||| || || || || | ||| |||| | Sbjct 530292 TCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGAAGAGAAATTCCCTTTCT 530351 Query 4803 TCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATT 4861 | ||| ||||| ||| |||||||| || || || |||||||||||||||||||| || Sbjct 530352 T----TGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTT 530407 Query 4862 TTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACA 4921 ||| || ||||| || || || || || | | |||||||| | ||||||||| | | Sbjct 530408 TTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCTTGGCT 530467 Query 4922 AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAAC 4981 ||||| || || || || || |||||||| || ||||| || ||| | || |||| || Sbjct 530468 AAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGAAAGCCAGAAA 530527 Query 4982 ATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGT 5041 || |||||||| || ||| |||||||| || || |||||| | | || | | Sbjct 530528 GTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCCT-GG 530586 Query 5042 TAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAAT 5101 | | | || || || | |||||||| || || || ||||| || |||| ||| || Sbjct 530587 AAGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACACATCTGCCAGAT 530646 Query 5102 ATCAGGATACTGAATCGGAA 5121 | || | || | || |||| Sbjct 530647 ACCATGGTATTCCATAGGAA 530666 >seq58 Length=13050397 Score = 179 bits (198), Expect = 3e-40 Identities = 489/737 (66%), Gaps = 30/737 (4%) Strand=Plus/Plus Query 4271 TACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAA 4330 |||| ||| || ||||| ||| | ||| ||||| |||||||| |||||||| ||| | Sbjct 9035787 TACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCTGT-GAAATATTCTCCATAAAGTCAGA 9035845 Query 4331 CGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG---AGCTACA--AGCAATCGGTCA 4385 ||||| | | || || || || || |||| || | | | ||| Sbjct 9035846 TGGATTTTCTACTCTGAAAACCTTG-----CTAAAGCCCAGCTTCATCATAAGCCTGTCT 9035900 Query 4386 GCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGT 4445 || || ||||| |||||||| |||| | |||||| || ||| | || ||||||| Sbjct 9035901 GCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTCATCCCAGTGAACTTCACAGGC 9035960 Query 4446 AGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATT 4505 | || | | | ||||| ||||||| | || || | | | ||| ||||||| | Sbjct 9035961 AAGGCCTCCATGAGGAACTCCTGTTCTAAGCTGACAGCATTGATAAATATTTCTTTTACT 9036020 Query 4506 TTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGC 4565 | | | ||||||| | || | || | |||| | || ||| | |||||| | Sbjct 9036021 CTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGCAGAGTCACAAAGT 9036080 Query 4566 AAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTC 4625 ||||| || ||||||||||| ||||| | |||| ||| || ||||| || || | Sbjct 9036081 AAACCCTCATCTCTGCTAATAAGTTCACTGGAAA--CTTAGGCCAGGCATCAATCCCCAT 9036138 Query 4626 TTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCA 4685 || || | | | ||||| | |||| || || | ||||| | ||||| || |||||| Sbjct 9036139 TTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCCTTCCACAGCGGCA 9036198 Query 4686 AACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCA 4744 || ||||| | | | | | | |||| ||||||| |||||| | || || | Sbjct 9036199 AAGGCTACAACACATTCTCTGTAGGTAGCT-TCTTTGTCCCCAATCCAATGCAAGACCTA 9036257 Query 4745 GTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTT- 4800 || |||| ||||| || | || ||||| | || || || || |||| |||| Sbjct 9036258 ATTTACTTTCTTCTTTACATAAGGTATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTC 9036317 Query 4801 TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATAT 4860 ||| ||| |||| |||||||| || || || |||||||||||| |||||| | Sbjct 9036318 TTTGAAA----TCTT-----TAAGTGTCAATAAGGAGACTATACATTTCACAATGTA-GT 9036367 Query 4861 TTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTAC 4920 |||| || ||||| || || | || || || | ||||||| | ||||||||| | | Sbjct 9036368 TTTCCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTGAACTTCCTGGC 9036427 Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAA-AAACGCCAAA 4979 |||| || || || ||||| |||| ||| || ||||| |||||||| ||| | || Sbjct 9036428 TTAATCACTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAAATTCATAA 9036487 Query 4980 ACATGAGATATAAAGTA 4996 |||||| ||||| || Sbjct 9036488 TTATGAGACATAAAATA 9036504 >seq82 Length=7573503 Score = 134 bits (148), Expect = 1e-26 Identities = 368/557 (66%), Gaps = 15/557 (3%) Strand=Plus/Plus Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 |||| ||| | || ||||| ||||||||||| || ||||| || ||||| || | | | Sbjct 1078425 CAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCTAG 1078484 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||| | || | | || |||||| | |||||||| ||||||||||| || Sbjct 1078485 GCATCAGTTCT-TATATT-------AAATATTGATGCAAATGAGCCAGAAAAGAAGATTT 1078536 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATC 4730 || | | | ||| || |||| || | | | | |||| ||||||| | || Sbjct 1078537 CTCCCATAGTGGCCAAGACTACAGCACGTTTTCTGTAGGTAGCTT-CTTTGTCCCCAGTC 1078595 Query 4731 CATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT--AA 4788 || || || || | ||||| ||||| || || | || | | || || || | Sbjct 1078596 CAACACAAGGCACAATCTGCTTTCTTCTTCACCCAAGACATCATTTCAATGGCATTGGAG 1078655 Query 4789 ATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTT 4848 | || || | | | | | | | || ||| ||| |||| || || || | ||| |||| Sbjct 1078656 AGAAATTCCCTGTCTTAG--GAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTT 1078713 Query 4849 CAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTT 4908 |||||||||| ||||| || ||||| || || || | || || | |||||| | | || Sbjct 1078714 CAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTT 1078773 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCAC-TGGCTGCA 4967 |||| || | | ||||| | || | ||||| || |||| || |||| || | || Sbjct 1078774 GAACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACATGCGTTCA 1078833 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGG 5027 || || || | |||||| |||||||| || ||| |||||||| || | |||||| Sbjct 1078834 AAGAAAGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTCCCAGTGC 1078893 Query 5028 GGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTG 5087 | || || | | ||| || || || | ||||| || || || || ||||| || Sbjct 1078894 TGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGAAGCCTCGGCTTTCTTA 1078953 Query 5088 TACATAGACCAAATATC 5104 ||||| ||||||||| Sbjct 1078954 TACATTTGCCAAATATC 1078970 >seq1 Length=90267253 Score = 116 bits (128), Expect = 3e-21 Identities = 161/221 (73%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || |||| || || | ||||| ||||| || ||| || |||| Sbjct 47431369 AGCCCTTGTGAAAACAGACGTTCAGATAGCTCTTCCTTCTGGGTGTTATGGAAGAGTAGC 47431310 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATA-GATT 31883 ||| | |||| ||||| | |||||||| ||||| || | || ||||| ||| ||| Sbjct 47431309 TCCACGTCCTGGCTTGGCTGCAAAACACTTCATCGATGTAAGAGCTGGTGTCATAAGATA 47431250 Query 31884 CAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACA 31940 | | ||||||||||| ||||| |||| || ||||||||||| |||||| | | | Sbjct 47431249 AAAATTATAGAGGAAATGTTGGTGTTGTATTATTTAATTTTGGCAAAGAAAAGT-TTGAA 47431191 Query 31941 GTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | |||||||||| ||| |||| || || ||||| ||| Sbjct 47431190 G--TAAAAAAGGGTGATCAAATAGCACAGCTCATTTGTGAA 47431152 >seq7 Length=60492774 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||||| ||| |||||||| || || || |||||||||||||||||||| ||||| || || Sbjct 54101124 GTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 54101183 Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||| || || || || || || | |||||||| | ||||||||| | | ||||| Sbjct 54101184 AATTTGGAAGCCATAGAAACAGCGTGCTTCTGTAATTTGAACTTCTTGGCTAAATC 54101239 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | |||| || || Sbjct 54099248 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 54099307 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || || || || || ||||| ||| Sbjct 54099308 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 54099367 Query 4692 AC 4693 || Sbjct 54099368 AC 54099369 >seq19 Length=38427206 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 3922352 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 3922408 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| ||||| |||| || || | ||||| || |||||||| || | ||| || | Sbjct 3922409 TGTGAGAGATAAAATACTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 3922468 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 3922469 ATAAGTCAAC 3922478 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 3902861 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 3902920 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 3902921 ATAAAATCAAAGGGATT 3902937 >seq11 Length=52463945 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/220 (70%), Gaps = 14/220 (6%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| ||||| ||||| || || | | || | ||||| |||| ||| ||| ||||||| Sbjct 318901 AGCCCTAGTGAAAAC--AT-TTGAGACAGCTCTTCCTTCTGGGTACTATGGAAGAATAGC 318957 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| ||||| ||||| | ||| | || || || || || || ||||| |||||| Sbjct 318958 TCCACATTCTGGGTTGGCTGCAAAATATTTCATAGATGTAGGAGCTGGTGTCATAGATGA 319017 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| |||||| ||| ||||| |||| ||||||||||| ||| || | | || Sbjct 319018 AGATTATAGAAAAAATGTTGG-----TGTTATTTAATTTTGGCAAAGAGAAGT-TTGAAG 319071 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 |||||||||| ||| |||| || | ||||| ||| Sbjct 319072 --TAAAAAAGGGTGATCAAATAGCACAGCACATTTGTGAA 319109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426973908527819