Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq161 367 2e-96 seq67 273 3e-68 seq58 257 2e-63 seq13 168 9e-37 seq87 141 1e-28 seq4 123 3e-23 seq7 116 5e-21 seq12166 105 9e-18 seq11 96.9 5e-15 seq19 93.3 6e-14 seq25 84.2 3e-11 >seq161 Length=830332 Score = 367 bits (406), Expect = 2e-96 Identities = 640/933 (69%), Gaps = 31/933 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| ||||||||| | |||| || | |||| ||||||| | || ||||| ||||| Sbjct 529762 GTTCATTTAAAAGTTAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCC 529821 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| | || || | ||||| || || ||||| || ||||| | ||| || Sbjct 529822 CATCCTCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAAT 529881 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| |||||||| ||||||||||| || | || ||| || ||||| || | || Sbjct 529882 ATTCTCCATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTCCAG 529941 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || || |||||||| || || || || || ||||||| |||||||| || || Sbjct 529942 CATAAGCCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAAT 530001 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 || || | || | || || || || ||| | ||||| || |||||||||| | || Sbjct 530002 TAGCTTCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCATTGATAAT 530061 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 | | | |||| | | ||| |||| | || || ||||| ||||| | || || Sbjct 530062 TGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGGC 530121 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||| ||||| || | || |||||| | ||||| | ||| || ||||||||||| || || Sbjct 530122 AAAGTCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGG 530181 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| ||||| ||||| |||||| ||||||||| || || Sbjct 530182 CATCAGTCCTCGTTTCTTGAGC-----------------------AGAAAAGAAGATTCC 530218 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCA 48322 || || || ||||| || || | ||||| || | || || |||| ||| | Sbjct 530219 CTCCACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAA 530278 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 || |||||||| || |||||||| ||||||||||||||| | || ||||| ||||| Sbjct 530279 ACGCAAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGAAGAG 530338 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 ||| | |||| ||| ||||||| |||||| || || | |||||||||||||| || Sbjct 530339 AAATTCCCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 530398 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || || ||||| || || || || || || || |||| | |||||||| || || || Sbjct 530399 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAAC 530458 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | |||||| || ||||||||||||||||||| |||||||| || ||| | || Sbjct 530459 TTCTTGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGAA 530518 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 || | | || ||||||||| ||| | | |||| | ||||| | || Sbjct 530519 AGCCAGAAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAAT 530578 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 || | || | | | || || || ||||||||||| || ||||| ||||| ||| |||| Sbjct 530579 GTCCCTGGA-AGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACACAT 530637 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 | ||| ||| || ||||| || || || || Sbjct 530638 CTGCCAGATACCATGGTATTCCATAGGAAAGAT 530670 >seq67 Length=10555288 Score = 273 bits (302), Expect = 3e-68 Identities = 580/860 (67%), Gaps = 8/860 (1%) Strand=Plus/Minus Query 47871 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTA 47930 ||||| || ||||| ||||| || || || || || ||||||||||||||||| ||||| Sbjct 3668870 TTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCCATAAAATCAAAGGGATTT 3668811 Query 47931 ACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCT 47990 |||| | | ||| ||| ||||| | ||| || | ||| || || || ||||| Sbjct 3668810 TCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCACAAGTAATCTTTCAGCTACAAATTCA 3668751 Query 47991 ATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTA 48050 ||||| |||||| |||| ||||| | || || |||||| | | || || Sbjct 3668750 ATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCAACTGGCAAGTCTTCTGTT 3668691 Query 48051 AGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTT 48110 | |||||| || || || ||||||||| || || ||| | ||| ||| || Sbjct 3668690 AAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCCCTCACCCTTTTCTTCTGA 3668631 Query 48111 GGTGG-ATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATC 48169 || || | || | | |||||||| || ||||| ||| | |||| ||||||| Sbjct 3668630 AGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAAGTCATAGAGAAGTTCTTCATC 3668571 Query 48170 TCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCA 48229 ||| | || | || || |||||||||| || || || | || | || || | ||| Sbjct 3668570 TCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATGGGACCTCTCTTCTTTAACCA 3668511 Query 48230 AAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAG 48289 || || || || |||||||| || ||||| || ||||| || || | || | Sbjct 3668510 GAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCACTGATGGCCACCAC 3668451 Query 48290 TCTCTCTCCGTAACTGGC--TTCGTTGTG-TATCCACCGTTGTGCCCAATCAGCCTTCTT 48346 ||| || || || | | ||| | || |||||| | | ||||| || | || || Sbjct 3668450 TCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCACAGGGCCCAGTCTGTTTTTTT 3668391 Query 48347 CTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTT 48406 ||| || | |||||||||| || |||||||| | ||| || || ||| |||| | Sbjct 3668390 CTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAATTTCCCTTTCTTGGGATCTCT 3668331 Query 48407 AACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTG 48466 | ||||||||||| | ||| || || | ||||||| ||| | || || || Sbjct 3668330 GATTCTAGTATCTATTAGCAAACTGTATATCTTTGAGTGAACATTCTTTATGAGAATTTG 3668271 Query 48467 AAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAA 48526 ||| || || ||||| | || |||| | || |||||| || ||| | || |||| Sbjct 3668270 AAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCTCCTGACTAAAGCTCTCCACCAA 3668211 Query 48527 ATTCTCATTTACTATTCCATCAC---TAGCAGCAAAAAATGCTAATACATGTTTAATAAA 48583 ||| |||||| | ||||||||| | ||| |||||| ||||| | ||| | ||| Sbjct 3668210 ATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAAAAAGCTAAGATATGAGAGAGAAA 3668151 Query 48584 ATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATA-TCTACTT 48642 ||| || || | || | || || ||| ||| | || ||| ||||||| | || || | Sbjct 3668150 ATAATTCTCATCTGATTTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATAAAGTCAACCT 3668091 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 |||| |||||||| || ||||||| ||| | || |||||| ||||| ||||| ||| | Sbjct 3668090 CTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCATACATTTTCCAAATATCGGGGTACT 3668031 Query 48703 GGATTGGGAAAATAACAAAT 48722 | ||||| || || |||||| Sbjct 3668030 GAATTGGAAATATGACAAAT 3668011 >seq58 Length=13050397 Score = 257 bits (284), Expect = 2e-63 Identities = 630/942 (67%), Gaps = 21/942 (2%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| || ||| |||| || | |||| ||| || | || ||||| |||| Sbjct 9035709 GTTCATTTAGAAATCAGCATCCAAGGTAAAAGAATTCCCTGTTGGATTTGACATCTCTCC 9035768 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| ||||| || ||||| || || ||| | ||| |||| ||| || Sbjct 9035769 CATCCTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCTG-TGAAAT 9035827 Query 47906 ATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGA 47965 ||| |||||||| ||| ||||||| || | | ||| || |||| || | | Sbjct 9035828 ATTCTCCATAAAGTCAGATGGATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCTTCAT 9035887 Query 47966 AATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT 48025 || || || ||||| |||||||| ||||| ||||||| || ||||| || | Sbjct 9035888 CATAAGCCTGTCTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTCATCCCAGT 9035947 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTAT 48085 | || || || | |||||| | || ||||| ||||| | ||||||||| | | Sbjct 9035948 GAACTTCACAGGCAAGGCCTCCATGAGGAACTCCTGTTCTAAGCTGACAGCATTGATAAA 9036007 Query 48086 TATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGC 48145 ||| | |||| | | ||| |||| | | || ||||| ||||| | || || Sbjct 9036008 TATTTCTTTTACTCTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGAACATCAGGCAGGC 9036067 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 | | |||||| | | ||| |||||||| ||||| | ||| | |||| | || || || Sbjct 9036068 AGAGTCACAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAACTT--AGGCCAGG 9036125 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| | ||| | ||| |||| | | ||||||| | ||||| || | ||||| | || Sbjct 9036126 CATCAATCCCCATTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAGAAGTTTCC 9036185 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCA 48322 ||| || || ||||| || || | |||| ||| | ||||| |||| ||||| Sbjct 9036186 TTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCCCCAATCCA 9036245 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 | || ||| | |||||||||||| |||| |||||||| || ||||| ||||| Sbjct 9036246 ATGCAAGACCTAATTTACTTTCTTCTTTACATAAGGTATTGTTTCAATGGCATTGAAGAG 9036305 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 ||| | |||| ||| ||||| ||||| || || | |||||||||||||| | Sbjct 9036306 AAATTCCCTTTCTTTGAAATCTT-----TAAGTGTCAATAAGGAGACTATACATTTCACA 9036360 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || | ||||| || || || || || | || ||||| ||||||| || || || Sbjct 9036361 ATGTA-GTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTAATTTGAAC 9036419 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA-AA 48561 ||| | |||| || ||||||| ||||||| ||| |||||||| || ||||| || Sbjct 9036420 TTCCTGGCTTAATCACTCCACCAAATTTTCATTTATTATGCCATCACTTGCTGCAAAGAA 9036479 Query 48562 ATGC-TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTG 48620 || | |||| ||| ||||||||| | | | || |||| | | ||| || | Sbjct 9036480 ATTCATAAT-TATGAGACATAAAATATCATACCTCAGATTTCAGGGCTTCCTAGT-ATAG 9036537 Query 48621 -ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 || || || || ||| |||| | || ||||| |||| || | || || || ||| | Sbjct 9036538 AATGTCCTTGGAAATAGCTACCACCTCTTCTGTCAAAAAGGAACCTTCAGCCTTCTTAGA 9036597 Query 48680 CATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || | ||| |||||| |||| ||| || || | ||||| Sbjct 9036598 AATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 9036639 >seq13 Length=48154242 Score = 168 bits (186), Expect = 9e-37 Identities = 554/845 (66%), Gaps = 51/845 (6%) Strand=Plus/Minus Query 47842 CTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATG 47901 |||| || || ||||| ||| | || | ||||| || || ||||| || ||||||| || Sbjct 23471110 CTCCAATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTG 23471051 Query 47902 ATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATT 47961 | ||||| | ||||| |||| ||| || || | | |||| | || | || | || Sbjct 23471050 AAATATTCTTCATAATGTCAAGTGGGTTTTCTACTCTGAAAATCTCACTAGAGCCCAGTT 23470991 Query 47962 CTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTC 48021 || || || || || || || || || | ||||||| || ||||| | Sbjct 23470990 TCAGCATAAGCCTGTCCGCCACAAACTCAATGCACTACTTCATCAAAGAGCAGTTCATCC 23470931 Query 48022 CTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCA 48081 | || || || || || | |||| || || ||||| ||||| || | ||| || | Sbjct 23470930 CAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTATCCTAACAAAATTGA 23470871 Query 48082 CTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAAC 48141 |||| | | | | | | ||| | | ||| || ||| | ||| |||||| | | Sbjct 23470870 TAATTAC---TTTAATCCTCTTCTCCCATAGTGTGTAG--CAAGTATTTGAACATTGAGC 23470816 Query 48142 ATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGAC 48201 | |||||||||| |||||||| ||||| | ||| | ||||||||||||| Sbjct 23470815 AGGCAAAATCAC-----------TCATCTCTGCTAATAAGTTCACTGGAAAATGTGAGAC 23470767 Query 48202 CGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT--TGCCGCGAAAGATCCAGAAAAGAA 48259 | ||||| || | | ||| || ||||| ||||| || || ||||| ||||||| ||| Sbjct 23470766 CAGGCATCAGCCATCATTTCTTAAGCCAGAATATACTGATGCAAAAGAACCAGAAAGGAA 23470707 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTC--TCTCTCCGTAACT-GGCTTCGTTGTG 48316 || |||| || ||||| || || || |||| | || | | ||| | Sbjct 23470706 GATTTCTTCCACATTAGCAAAGGC--TACATCATGCTCTTCACAAATAGACTT-----TT 23470654 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| | | || |||| | |||||||| ||||||||||| |||| | |||| Sbjct 23470653 TATCC----TGATTCCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGCCATT 23470598 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 |||| ||| | |||||| ||| || |||| || | || || | | ||| ||||| Sbjct 23470597 GAAGATAAATTCTTTTTCTTTGGAATTTTTAGTGTGA-TA---ATAAGGAAACTGTACAT 23470542 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 | | || || || ||| | || || || || ||||| || ||||| |||||||| || Sbjct 23470541 TACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAAT 23470482 Query 48497 CTGTACCTCCGTACAAAATCG-TTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || | || | |||| | |||| |||| || ||| || ||| | ||||| | | Sbjct 23470481 TTGAATTTCTTGGCTAAATTGCTTCA-CCAATTTTTCACGTATTATGCTATCAC---CTG 23470426 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG--TCAGTTTATTCCA 48613 | |||| || | |||||| ||||||| | | || | ||| |||| | ||| Sbjct 23470425 CTAAAA--GCCAGAACATGTGCTATAAAATCTCTCTCCT--CAAGCTTCAGGGCTTCCCA 23470370 Query 48614 GTCATTGATATCTT--TTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 | |||| || || | | | |||||| || | | |||||||||| || ||||| ||| Sbjct 23470369 G-GGTTGA-ATGTTCCTGAAGAGATCTACCTCGTTAACTGTCCAAAAGGAAGCCTCAGCT 23470312 Query 48672 TTTTT 48676 ||||| Sbjct 23470311 TTTTT 23470307 >seq87 Length=7156779 Score = 141 bits (156), Expect = 1e-28 Identities = 403/621 (65%), Gaps = 40/621 (6%) Strand=Plus/Plus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 47850 |||| |||||||||| || | |||| ||| ||| | || ||||| |||||||| Sbjct 717298 TTTAGAAGTCAACATTCAAGGTAAAAGAATTCTCTATTAGATTGGACATCACTCCCATGC 717357 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 | |||| || || || |||| || || ||| | || ||||||| ||| |||| | Sbjct 717358 TCTGATGCTCGCCTAC-----TCTCAAAGAAGTTATTCTTCCCTTCCAGTGAATTATTCT 717412 Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCA 47970 ||||||| |||| | ||| || | | ||| || | ||| | || || || | Sbjct 717413 CCATAAAGTCAACTATATTTTCTACTCTGAAAACCTTGTGAAAGCTCAACTCCAGCATGA 717472 Query 47971 GTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTT 48030 | || ||| | ||||||| || || ||||||| || ||||| || | || | Sbjct 717473 GCCTGTCTACCACGAATTTAATGTACTGCTTCATCAAAGTGCAGTTCATCCCAGTGAGCT 717532 Query 48031 TAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCG 48090 | || | | ||| |||| || ||||| ||||| || | ||||||| | ||||| | Sbjct 717533 TCACAGCCAAGGCCACCGTGAGGAACTCCTGTTCTATCCTCACAGCATTGATGATTATTG 717592 Query 48091 ATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAAT 48150 | || | | | ||| |||| | |||| |||||||||||| | || ||||| Sbjct 717593 CTTTTGCTCTCTGCTCTGATGGTTTGTGTAACAGGTGTTTAAACATTCAGCAGGCAAAGC 717652 Query 48151 CACAATG-AAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATT 48209 |||| || || |||| || ||| |||| | ||| || |||||||||||| Sbjct 717653 CACAGTGTAAACCCTTGAT-TCTGATAATAAGTTCATTGGAAAATGTGAGA--------- 717702 Query 48210 AGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 48269 ||| ||||||| | | ||| | ||||||||||| || |||||| Sbjct 717703 -----------------CCAGAATATTGACACAAAAAAACCAGAAAAGAAGATTCCTTCT 717745 Query 48270 ACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCACCGT 48326 | | ||||| || || ||| |||| | || || |||| ||||| | Sbjct 717746 GCAGTGGCAAAGGCTAAAACATGTTCT-CGTAGGTAGCCTCTTTGTCCCCAATCCAACTC 717804 Query 48327 TGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 48386 |||||||| || ||| |||| ||||||||||| ||| |||||||| ||||||| Sbjct 717805 AAGGCCCAATCTGCTTTCCTCTTCACACAAGGCATCCTTTTGATAGCATTGGAGAGAAAT 717864 Query 48387 tttttttCATTGCTATCTTTA 48407 | |||| || ||||||| Sbjct 717865 TCCCTTTCTTTAGAATCTTTA 717885 Score = 104 bits (114), Expect = 3e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||||| |||||| || || | ||||||||||||| || || || ||||| | || Sbjct 718051 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTTAGAATGCATGTTTTCTGTGGC 718110 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTC 48520 | || || || || ||||| | | ||||||| || || || || | ||||| ||| Sbjct 718111 AACTTGGAAGCCATAGAAACAGCACACTTCTGTAATTTGAACTTCTTGGCTAAATCATTC 718170 Query 48521 AGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAAT 48580 ||||||| |||||| ||| |||||||| || ||||| || || | ||| | || Sbjct 718171 CACCAAATTTTCATTTGTTATGCCATCACTTGCTGCAAAGAAAGCCAGAACAAGCAATAT 718230 Query 48581 AAAATAT 48587 ||||||| Sbjct 718231 AAAATAT 718237 >seq4 Length=67649338 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| ||||| || || |||||| ||| |||| || || ||||| || | Sbjct 16420953 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 16420894 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| ||||||||||||||||| ||||| || || |||||||| | || || | Sbjct 16420893 TCAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCTGCTGCCATTTTGAGAACAGTTT 16420834 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | ||| || ||| ||| || | ||||| |||| Sbjct 16420833 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTAAGGTCATCAGGAA 16420783 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | || Sbjct 16418166 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 16418107 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 16418106 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 16418047 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 16418046 TTTCTTACACCAT 16418034 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| | |||||||| || || Sbjct 16400266 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGTGTAAACCACCTCTCAGAAAGAAGGTTA 16400207 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| || |||||| || || | ||| | ||||||| Sbjct 16400206 TACGTTTCAATTGCAGCATCAATGTCTTCTTTATGAATCCCCACAGATACCCTCATCAAC 16400147 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 16400146 ATATGTTGTGGTCTTTCAGCC 16400126 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| ||||||| ||||| ||||||||||| |||||||| ||| Sbjct 16407345 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACACATCAAAGAC 16407286 Query 77985 CAGTC 77989 ||||| Sbjct 16407285 CAGTC 16407281 >seq7 Length=60492774 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 54099248 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 54099307 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||||| || ||||| ||||||||||| || || || || || ||||| || Sbjct 54099308 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGC 54099366 Score = 105 bits (116), Expect = 9e-18 Identities = 111/144 (77%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| ||||||||||| |||| || | |||| ||||||| | || ||||| ||||| Sbjct 54097683 GTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCC 54097742 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || || | ||||| || || ||||| || ||||| | ||| || Sbjct 54097743 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAAT 54097802 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| |||||||| ||||||||||| Sbjct 54097803 ATTCTCCATAAAGTCAAATGGATT 54097826 >seq12166 Length=2209 Score = 105 bits (116), Expect = 9e-18 Identities = 111/144 (77%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| ||||||||||| |||| || | |||| ||||||| | || ||||| ||||| Sbjct 2050 GTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCC 2109 Query 47846 CATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATAT 47905 ||| | ||||| || || || | ||||| || || ||||| || ||||| | ||| || Sbjct 2110 CATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAAT 2169 Query 47906 ATTTTCCATAAAATCAAATGGATT 47929 ||| |||||||| ||||||||||| Sbjct 2170 ATTCTCCATAAAGTCAAATGGATT 2193 >seq11 Length=52463945 Score = 96.9 bits (106), Expect = 5e-15 Identities = 179/259 (69%), Gaps = 13/259 (5%) Strand=Plus/Minus Query 45872 TCAGTCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCAC 45929 || ||||||| || ||||| ||| ||| | | ||||||||| ||| | | | || Sbjct 319195 TCTGTCCAGTAGAACCAAAACCTCCTGAAC--CCCTTTCAGTATCATTCAACACTAGAAC 319138 Query 45930 TTCCTTCAGATCAGGATAATATA-TACGTTGATAGATTAGTTGAGCTATTCTATCACCCG 45988 ||| | | ||| |||||| | | | |||| | | || | || |||||| ||||||| Sbjct 319137 TTCTTCTATATCTGGATAAAAAAATCCGTTCACAAATGTGCTGTGCTATTTGATCACCCT 319078 Query 45989 TATTTATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTAT 46048 | |||| |||||| | ||||| ||| ||| | || || |||| | ||||| Sbjct 319077 TTTTTACTTCAAACTTCTCTTTGCCAAAATTAA-----ATAACACCAACATTTTTTCTAT 319023 Query 46049 AATCTTCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATC 46105 ||||||||||||| || || |||| ||||| || | |||| || || ||||| Sbjct 319022 AATCTTCATCTATGACACCAGCTCCTACATCTATGAAATATTTTGCAGCCAACCCAGAAT 318963 Query 46106 TAGGAGCTATTCTTCCATA 46124 ||||||||||||||||| Sbjct 318962 GTGGAGCTATTCTTCCATA 318944 >seq19 Length=38427206 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 48163 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTT 48222 |||||||||| || || | ||| || ||||||||||| || ||||| || || | || | Sbjct 3916225 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 3916284 Query 48223 TGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | | ||| ||||| || || |||||||| || ||||| || ||||| || || ||||| | Sbjct 3916285 TTAACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 3916344 Query 48283 C 48283 | Sbjct 3916345 C 3916345 >seq25 Length=31340621 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/229 (68%), Gaps = 9/229 (4%) Strand=Plus/Minus Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 ||||| | || |||||||| | || |||||| | || | ||| |||||||| | | Sbjct 4087944 GCCCAGGCTGCTTTCTTCTTCATACCAGGCAT-----CAATGGTATTGAAGAGAAATTCT 4087890 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 |||| ||| |||||||| | || | || | ||||||||| |||| || || || Sbjct 4087889 CTTTCTTTGGGATCTTTAATGGAAATGTCAGGAAGGAGACTATACCTTTCAGAATGTATG 4087830 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCG----CTTCTGTGATCTGTACCTC 48505 ||| | || || || || || || || | | | | ||||||| || || || || Sbjct 4087829 TTTGCCATGGCAATTTGGAAGCCATAGATAGCAATGGTGGGCTTCTGTAATTTGAACTTC 4087770 Query 48506 CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCA 48554 | ||||| ||| | ||| || ||||||||||| |||| ||| ||| Sbjct 4087769 TTGGCTAAATCCTTCTGTCAACTTTTCATTTACTATGCCATTACTTGCA 4087721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694542517895520