Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq161 361 8e-95 seq67 246 4e-60 seq58 233 3e-56 seq82 174 2e-38 seq13 154 2e-32 seq87 136 6e-27 seq4 120 4e-22 seq7 116 5e-21 seq19 114 2e-20 >seq161 Length=830332 Score = 361 bits (400), Expect = 8e-95 Identities = 637/929 (69%), Gaps = 32/929 (3%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 46339 ||||||||| |||| || | |||| ||||||| | | ||||| |||||||| Sbjct 529767 TTTAAAAGTTAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCCATCC 529826 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || || | ||||| | ||||| || || ||||| || ||||| | ||| ||||| | Sbjct 529827 TCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCT 529886 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 ||||||| ||||| ||||| || || ||| || ||||| || | || || | Sbjct 529887 CCATAAAGTCAAATGGATTTTCTACTTTGAAAACCTTGTTAAAGCCCAGCTCCAGCATAA 529946 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTT 46519 | |||||||| || || || || ||| ||||||| |||||||| || || || | Sbjct 529947 GCCTATCTGCCACAAAGTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCT 530006 Query 46520 TGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA-TTATC 46578 | | || | || || || || ||| | ||||| || |||||||||| |||| || | Sbjct 530007 TCTCAGGCAAGGCTTCTGTGAGGAACGCCTGTTCTATTGTGACAGCATT-GATAATTGTT 530065 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | ||||| | | ||| |||| |||| || ||||| ||||| | || ||||| Sbjct 530066 TCTTTTACTCTCTGCTCTGATGGTTTGTGCAGCAGGTGTTTGAACATCAGGCAGGCAAAG 530125 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||||| || | ||| |||||| | ||||| | ||| || ||||||||||| |||||||| Sbjct 530126 TCACAGTGTAAGCCCTCATCTTTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 530185 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 ||||| || || |||||| ||||||||| || || || Sbjct 530186 AGTCCTCGTTTCTTGAGC-----------------------AGAAAAGAAGATTCCCTCC 530222 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTT 46815 ||||| || || || |||| | ||||| || | || || || | |||| | | Sbjct 530223 ACAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAACGC 530282 Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875 |||||||| || || ||||| ||||||||||||||| | || ||||| |||||||| Sbjct 530283 AAGGCCCAATCGGCTTTCTTCTTCACACAAGGCATTGTTACAATGGCATTGAAGAGAAAT 530342 Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935 | |||| | ||||||| || || || || | |||||||||||||| ||||| Sbjct 530343 TCCCTTTCTTTGGAGTCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGT 530402 Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 |||||||| || || || || || || || |||| | ||||| ||||| || || ||| Sbjct 530403 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTTCT 530462 Query 46996 GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCC 47055 | |||||| || |||||||||||| ||||| |||||||| || ||| | || ||| Sbjct 530463 TGGCTAAATCGCTCCACCAAATTCTCATTTACTATGCCATCACTTGCCGCAGAGAAAGCC 530522 Query 47056 AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCT 47115 | | || ||||||||| ||| || | |||| | ||||| | || || Sbjct 530523 AGAAAGTGGGATATAAAATATCATTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCC 530582 Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 | || | | | || || || |||||||| || || ||||| ||||| ||| |||| | | Sbjct 530583 CTGGA-AGAGCCACCTCCTCGGCTGTCCAAAAGGAAGCCTCAGCTTTATTACACATCTGC 530641 Query 47176 CATATATCACGATATTGGATCGGAAAAAT 47204 || ||| || | |||| || ||||| || Sbjct 530642 CAGATACCATGGTATTCCATAGGAAAGAT 530670 >seq67 Length=10555288 Score = 246 bits (272), Expect = 4e-60 Identities = 573/860 (67%), Gaps = 8/860 (1%) Strand=Plus/Minus Query 46360 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAACGGATTA 46419 ||||| || ||||| ||||| || || || || || ||||||||||||||||| ||||| Sbjct 3668870 TTCTCAAAGAAATTTGTTTTCCCATCTAAAGAAATGTTTTCCATAAAATCAAAGGGATTT 3668811 Query 46420 GTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCT 46479 | | | ||| ||| ||||| | ||| || | ||| || || || ||||| Sbjct 3668810 TCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCACAAGTAATCTTTCAGCTACAAATTCA 3668751 Query 46480 ATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTA 46539 |||||| |||||| |||| ||||| | ||||| || || | | || || Sbjct 3668750 ATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCAACTGGCAAGTCTTCTGTT 3668691 Query 46540 AGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTT 46599 | |||||| || ||||| ||||||||| || ||| | || ||| || Sbjct 3668690 AAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCCCTCACCCTTTTCTTCTGA 3668631 Query 46600 GGTGG-ATGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATC 46658 || || | || | | |||||||| || ||||| ||| | |||| ||||||| Sbjct 3668630 AGTCTTATTTACTAAGTACTGAAACATTAGGCAAGCAAAGTCATAGAGAAGTTCTTCATC 3668571 Query 46659 TCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCA 46718 ||| | || | || || |||||||||| ||||| || | || | ||| || | ||| Sbjct 3668570 TCTGTTGATCAGCTCATTGAAAAATGTGAGTCCAGGGATGGGACCTCTCTTCTTTAACCA 3668511 Query 46719 AAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAG 46778 || ||||| || |||||||| || ||||| || ||||| ||||| || || || | Sbjct 3668510 GAAAATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCACTGATGGCCACCAC 3668451 Query 46779 TCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCCTTTTT 46835 ||| || || || | | | ||| ||||| | | ||||| || | ||||| Sbjct 3668450 TCTTTCCCCAAAAGTAGACTTTCTATCTGCTATCCATCACAGGGCCCAGTCTGTTTTTTT 3668391 Query 46836 CTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTT 46895 ||| || | |||||||||| || |||||||| | ||| || || | |||| | Sbjct 3668390 CTTAACGTATGGCATTGTTTTAATTGCATTAAATAAAAATTTCCCTTTCTTGGGATCTCT 3668331 Query 46896 AACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTG 46955 | |||||||||| | ||| || || | ||| |||| || | || || || Sbjct 3668330 GATTCTAGTATCTATTAGCAAACTGTATATCTTTGAGTGAACATTCTTTATGAGAATTTG 3668271 Query 46956 AAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAA 47015 ||| || || ||||| | || || | || || ||||| || ||| | || ||| Sbjct 3668270 AAAACCATAGAAACAGCAAGCCTCTGAAACTTGCACCTCCTGACTAAAGCTCTCCACCAA 3668211 Query 47016 ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT---GCCAATACATGTTTAATAAA 47072 ||| ||||| | |||||||||| | |||||||| || || | ||| | ||| Sbjct 3668210 ATTTTCATTTCCATTTCCATCACTGGTTGCAAAAAAAAAAGCTAAGATATGAGAGAGAAA 3668151 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATA-TCTACTT 47131 ||| || ||||| | | || || ||| ||| | || ||| ||||||| | || || | Sbjct 3668150 ATAATTCTCATCTGATTTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATAAAGTCAACCT 3668091 Query 47132 CTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATT 47191 |||| ||||||||||| || |||| ||| | || |||||| ||||| ||||| | || | Sbjct 3668090 CTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCATACATTTTCCAAATATCGGGGTACT 3668031 Query 47192 GGATCGGAAAAATAACAAAT 47211 | || ||||| || |||||| Sbjct 3668030 GAATTGGAAATATGACAAAT 3668011 >seq58 Length=13050397 Score = 233 bits (258), Expect = 3e-56 Identities = 597/895 (67%), Gaps = 19/895 (2%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| ||||||| | || || |||||||| ||||| || || ||| | ||| | Sbjct 9035757 TGACATCTCTCCCATCCTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTC 9035816 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 ||| ||| ||||| |||||||| ||| | ||||| || | ||| || |||| Sbjct 9035817 TTCTG-TGAAATATTCTCCATAAAGTCAGATGGATTTTCTACTCTGAAAACCTTGCTAAA 9035875 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 || | | || || || ||||| |||||||| |||||| ||||||| || Sbjct 9035876 GCCCAGCTTCATCATAAGCCTGTCTGCCACGAATTCAATATACTGCTTCATCAAAGTGCA 9035935 Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGAC 46562 ||||| || ||| || || || | |||||| | || ||||| ||||| | |||| Sbjct 9035936 GTTCATCCCAGTGAACTTCACAGGCAAGGCCTCCATGAGGAACTCCTGTTCTAAGCTGAC 9035995 Query 46563 AGCATCCGATAT-TATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAA 46621 ||||| |||| ||| | ||||| | | ||| |||| || | || ||||| | Sbjct 9035996 AGCATT-GATAAATATTTCTTTTACTCTCTGCTCCAATGGTTTGTGTAGCAGGTGTTTGA 9036054 Query 46622 ACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAA 46681 |||| | || ||| | |||||| | | || |||||||| ||||| | ||| | |||| Sbjct 9036055 ACATCAGGCAGGCAGAGTCACAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAA 9036114 Query 46682 ATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAG 46741 | || |||||||| | ||| | || |||| | | ||||| | | ||||| || Sbjct 9036115 CTT--AGGCCAGGCATCAATCCCCATTTCTTGAACTAGAATATTGATTCAAAAGAAACAT 9036172 Query 46742 AAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCAT 46801 | ||||| | ||||| ||||| || || || |||| | |||| ||| | || || | Sbjct 9036173 AGAAGAAGTTTCCTTCCACAGCGGCAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTT 9036232 Query 46802 TATG---AATCCACCTTTGAGCCC-AATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 | | |||||| | || || ||| | || ||||||||| |||| |||||||| Sbjct 9036233 TGTCCCCAATCCAA-TGCAAGACCTAATTTACTTTCTTCTTTACATAAGGTATTGTTTCA 9036291 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 || ||||| |||||||| | |||| | |||||||| || || || | ||| Sbjct 9036292 ATGGCATTGAAGAGAAATTCCCTTTCTTTGAAATCTTTAA-----GTGTCAATAAGGAGA 9036346 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCT 46977 ||||||||||| |||| | |||||| || || || || || | || ||||| || Sbjct 9036347 CTATACATTTCACAATGTA-GTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGAACT 9036405 Query 46978 TCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCA 47037 || ||||| || || || | |||| || |||||| ||||| | ||| |||||| Sbjct 9036406 TCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTATTATGCCATCA 9036465 Query 47038 CTAGCAGCAAA-AAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT 47096 || || ||||| |||| | | ||| ||||||||| | | || | |||| Sbjct 9036466 CTTGCTGCAAAGAAATTCATAATTATGAGACATAAAATATCATACCTCAGATTTCAGGGC 9036525 Query 47097 ATTCCAGTCATTG-ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 | | ||| || | || || || || ||| |||| | || ||||| | || || | | Sbjct 9036526 TTCCTAGT-ATAGAATGTCCTTGGAAATAGCTACCACCTCTTCTGTCAAAAAGGAACCTT 9036584 Query 47156 CTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | || || ||| | || | ||| |||||| | ||| ||| ||||| | ||||| Sbjct 9036585 CAGCCTTCTTAGAAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 9036639 >seq82 Length=7573503 Score = 174 bits (192), Expect = 2e-38 Identities = 572/890 (64%), Gaps = 42/890 (5%) Strand=Plus/Plus Query 46325 ACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTT 46384 |||| |||||||| | || || || || || |||| || ||||| || || |||| Sbjct 1078146 ACATCACTCCCATCCTCTGATACTCGCCCAC-----TCTCAAAGAAATTGGTCTTCCCTT 1078200 Query 46385 CCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATC 46444 | |||| ||| |||||||| |||| ||||| || | ||| || ||||| Sbjct 1078201 CTGATGAACCATTCTCCATAAAGACAAATGGATTTTCCACTCTGAAAACCTTCTTAAAGT 1078260 Query 46445 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAAT 46504 | || ||| || || || ||||| |||||||| || | |||||| ||| | Sbjct 1078261 CCAACTCTAGCATGAGCCTGTCTGCCACGAATTCAATGAATTGCTTCATCCAAGTACAGT 1078320 Query 46505 TCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAG 46564 |||| || ||||| || | || | |||||||| || | ||| ||||| | |||||| Sbjct 1078321 TCATCCCAATGAGCTTCATGGGCAAGGCCTCCGTGAGGAGCTCCTGTTCCACCCTGACAG 1078380 Query 46565 CATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACA 46624 ||| || | ||| | || | || | || | || ||| Sbjct 1078381 CAT-------------TGCT-CTGAT----------GTAGGTGTAGCAGGTATTCGGACA 1078416 Query 46625 TTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATG 46684 | || |||| ||| | || | || || ||||| || || | ||| || ||||||| Sbjct 1078417 TCGGGCAA-CAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATG 1078475 Query 46685 TGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAA 46744 |||| | |||||| ||| | || |||||| | || || || ||||||| Sbjct 1078476 TGAGGCTAGGCATCAGTTCTTATATT--------AAATATTGATGCAAATGAGCCAGAAA 1078527 Query 46745 AGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT 46804 |||| || || | | || || || | ||| | | || ||| | || || || | Sbjct 1078528 AGAAGATTTCTCCCATAGTGGCCAAGACTACAGCACGTTTTCTGTAGGTAGCTTCTTTGT 1078587 Query 46805 G---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 | |||| | || ||||| || || ||||| || |||| ||| |||| || | Sbjct 1078588 CCCCAGTCCAACACAAGGCACAATCTGCTTTCTTCTTCACCCAAGACATCATTTCAATGG 1078647 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 |||| ||||||| | | || | || ||||| || | || || | |||| || Sbjct 1078648 CATTGGAGAGAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCAT 1078707 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 | ||||| ||||| |||||||| || || || || || || | ||||| | ||||| Sbjct 1078708 ATATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCCGGCTTCTA 1078767 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAG 47041 |||| || |||||| | |||||| | || ||| ||| | |||| ||||||| | Sbjct 1078768 TAATTTGAACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACATG 1078827 Query 47042 CAG-CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTC 47100 | |||| || || | |||||| ||||||||| ||| || | |||| | | Sbjct 1078828 CGTTCAAAGAAAGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTCC 1078887 Query 47101 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 |||| | | || || || | ||| || || || ||||||||||| || ||||| ||| Sbjct 1078888 CAGTGCTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGAAGCCTCGGCT 1078947 Query 47161 TTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 || |||||||| | ||| ||||| | || | ||| | ||| || |||| Sbjct 1078948 TTCTTATACATTTGCCAAATATCGTGGTAATTGATAGCAAACATGGCAAA 1078997 >seq13 Length=48154242 Score = 154 bits (170), Expect = 2e-32 Identities = 545/840 (65%), Gaps = 41/840 (5%) Strand=Plus/Minus Query 46331 CTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATG 46390 |||| || || || || ||| |||| | ||||| || || ||||| || ||||||| || Sbjct 23471110 CTCCAATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTG 23471051 Query 46391 ATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATT 46450 | ||||| | ||||| |||| || || || | |||| | || | || | || Sbjct 23471050 AAATATTCTTCATAATGTCAAGTGGGTTTTCTACTCTGAAAATCTCACTAGAGCCCAGTT 23470991 Query 46451 CTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTC 46510 || || || || || || || || || || ||||||| || ||||| | Sbjct 23470990 TCAGCATAAGCCTGTCCGCCACAAACTCAATGCACTACTTCATCAAAGAGCAGTTCATCC 23470931 Query 46511 CTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCG 46570 | ||||| || || || | |||| || || ||||| ||||| || | ||| || | Sbjct 23470930 CAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTATCCTAACAAAATT-G 23470872 Query 46571 ATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAAC 46630 ||| | | | | || || ||| | | ||| || | ||| | ||| |||||| | | Sbjct 23470871 ATAATTACTTTAATCCTCTT--CTCCCATAGTG--TGTAGCAAGTATTTGAACATTGAGC 23470816 Query 46631 ATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCC 46690 | |||||||||| |||||||| ||||| | ||| | ||||||||||| | Sbjct 23470815 AGGCAAAATCAC-----------TCATCTCTGCTAATAAGTTCACTGGAAAATGTGAGAC 23470767 Query 46691 CAGGCATTAGTCCACGCTTTTTGAGCCAAAATATA--GCCGCGAAAGATCCAGAAAAGAA 46748 ||||||| || | | || || ||||| |||||| | || ||||| ||||||| ||| Sbjct 23470766 CAGGCATCAGCCATCATTTCTTAAGCCAGAATATACTGATGCAAAAGAACCAGAAAGGAA 23470707 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 || |||| ||| || || || ||| |||| | || | | | | | || Sbjct 23470706 GATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTTCACAAATAG----ACTTTTTAT 23470651 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 || || || |||| | || ||||| ||||||||||| |||| | |||| || Sbjct 23470650 CCTGATT----CCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGCCATTGAA 23470595 Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 || ||| | |||||| | || |||| ||| || | | ||| |||||| | Sbjct 23470594 GATAAATTCTTTTTCTTTGGAATTTTTA----GTGTGATAATAAGGAAACTGTACATTAC 23470539 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 ||||| || ||| | || || || || ||||| || ||||| ||||| ||||| || Sbjct 23470538 AGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAATTTG 23470479 Query 46989 TACCTCTGTACAAAATCG-TTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAA 47047 | ||| | |||| | |||| ||| || ||| | ||| | ||||| | || | Sbjct 23470478 AATTTCTTGGCTAAATTGCTTCA-CCAATTTTTCACGTATTATGCTATCAC---CTGCTA 23470423 Query 47048 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCAT 47107 ||| |||| |||||| ||||||| | | || || |||| | |||| | Sbjct 23470422 AAA--GCCAGAACATGTGCTATAAAATCTCTCTCCTCAAGCTTCAGGGCTTCCCAG-GGT 23470366 Query 47108 TGATATCTT--TTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTT 47165 ||| || || | | | |||||| || | | ||||||| || || ||||| |||||||| Sbjct 23470365 TGA-ATGTTCCTGAAGAGATCTACCTCGTTAACTGTCCAAAAGGAAGCCTCAGCTTTTTT 23470307 >seq87 Length=7156779 Score = 136 bits (150), Expect = 6e-27 Identities = 404/622 (65%), Gaps = 42/622 (7%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 46339 |||| ||||| |||| || | |||| ||| ||| | | ||||| |||||||| Sbjct 717298 TTTAGAAGTCAACATTCAAGGTAAAAGAATTCTCTATTAGATTGGACATCACTCCCATGC 717357 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 | || | || ||||| |||| || || ||| | || ||||||| ||| |||| | Sbjct 717358 TCTGATGCTCGCCTAC-----TCTCAAAGAAGTTATTCTTCCCTTCCAGTGAATTATTCT 717412 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 ||||||| |||| ||| || | ||| || | ||| | || || || | Sbjct 717413 CCATAAAGTCAACTATATTTTCTACTCTGAAAACCTTGTGAAAGCTCAACTCCAGCATGA 717472 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTT 46519 | || ||| | ||||||| || ||| ||||||| || ||||| || |||| | Sbjct 717473 GCCTGTCTACCACGAATTTAATGTACTGCTTCATCAAAGTGCAGTTCATCCCAGTGAGCT 717532 Query 46520 TGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGAT-ATTATC 46578 | || | | ||| |||| || ||||| ||||| || | ||||||| ||| ||||| Sbjct 717533 TCACAGCCAAGGCCACCGTGAGGAACTCCTGTTCTATCCTCACAGCATT-GATGATTATT 717591 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | | || || | | ||| |||| || | || |||||||||||| | || ||||| Sbjct 717592 GCTTTTGCTCTCTGCTCTGATGGTTTGTGTAACAGGTGTTTAAACATTCAGCAGGCAAAG 717651 Query 46639 TCACAATG-AAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 |||| || || |||| || ||| |||| | ||| || ||||||||||| |||| Sbjct 717652 CCACAGTGTAAACCCTTGAT-TCTGATAATAAGTTCATTGGAAAATGTGAGACCAG---- 717706 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 ||||| | | | ||| | ||||||||||| || ||||| Sbjct 717707 ----------------------AATATTGACACAAAAAAACCAGAAAAGAAGATTCCTTC 717744 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GAATCCACCT 46814 | ||| || || || | || ||| |||| | || || || | |||||| || Sbjct 717745 TGCAGTGGCAAAGGCTAAAACATGTTCT-CGTAGGTAGCCTCTTTGTCCCCAATCCAACT 717803 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 |||||||| || || |||| ||||||||||| ||| |||||||| ||||||| Sbjct 717804 CAAGGCCCAATCTGCTTTCCTCTTCACACAAGGCATCCTTTTGATAGCATTGGAGAGAAA 717863 Query 46875 GtttttttCATCACTATCTTTA 46896 | |||| | | ||||||| Sbjct 717864 TTCCCTTTCTTTAGAATCTTTA 717885 Score = 100 bits (110), Expect = 4e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||||| || || || || | ||||||||||||| ||||| |||||||| | || Sbjct 718051 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTTAGAATGCATGTTTTCTGTGGC 718110 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 | || || || || ||||| | |||| ||||| || || ||| | ||||| ||| Sbjct 718111 AACTTGGAAGCCATAGAAACAGCACACTTCTGTAATTTGAACTTCTTGGCTAAATCATTC 718170 Query 47010 AGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAAT 47069 |||||| ||||| ||| |||||||| || ||||| || |||| ||| | || Sbjct 718171 CACCAAATTTTCATTTGTTATGCCATCACTTGCTGCAAAGAAAGCCAGAACAAGCAATAT 718230 Query 47070 AAAATATTTTTCATC 47084 ||||||| ||| || Sbjct 718231 AAAATATCGTTCCTC 718245 >seq4 Length=67649338 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| ||||| || || |||||| ||| | || || || ||||| || | Sbjct 16420953 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 16420894 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| ||||||||||||||||| ||||| || || |||||||| | || || | Sbjct 16420893 TCAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCTGCTGCCATTTTGAGAACAGTTT 16420834 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | ||| || ||| ||| || | ||||| |||| Sbjct 16420833 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTAAGGTCATCAGGAA 16420783 Score = 118 bits (130), Expect = 2e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | || Sbjct 16418166 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 16418107 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 16418106 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 16418047 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 16418046 TTTCTTACACCAT 16418034 Score = 105 bits (116), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || ||||| || || | || Sbjct 16395535 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGATG 16395476 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || | |||||||| | Sbjct 16395475 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAGAGTATCTAGT 16395416 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || |||||||| | |||| ||||| || |||||||||| Sbjct 16395415 TCCACTGTGGTAACTCCACTGTATAAGCCTTGGATTACTTTCATGG 16395370 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 ||||||||||| |||||||| || ||||| ||||||| || ||||| | || || | Sbjct 16406665 ACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCGCTGC 16406606 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || |||||||| ||||| || | ||| |||||||| | || || ||||||| ||| Sbjct 16406605 TCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGT 16406546 Query 76718 TCTAGATATATCGC 76731 || || || || || Sbjct 16406545 TCCAGGTAAATAGC 16406532 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||| ||||||| ||||||||||||||| ||||| Sbjct 16407355 ATATAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 16407296 Query 76570 CATCAATGACCACTC 76584 |||||| ||||| || Sbjct 16407295 CATCAAAGACCAGTC 16407281 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| ||||| || ||||| | |||||||| || || Sbjct 16400266 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGTGTAAACCACCTCTCAGAAAGAAGGTTA 16400207 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || || || || |||||| || |||| || | ||||||| Sbjct 16400206 TACGTTTCAATTGCAGCATCAATGTCTTCTTTATGAATCCCCACAGATACCCTCATCAAC 16400147 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || |||| ||| Sbjct 16400146 ATATGTTGTGGTCTTTC 16400130 >seq7 Length=60492774 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||| || ||||||||||| |||||||| ||||| || || ||| Sbjct 54099248 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 54099307 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||||||||| || || || ||||| || || || Sbjct 54099308 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 54099367 Query 46774 ACAA 46777 |||| Sbjct 54099368 ACAA 54099371 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||||| || || || || | |||||||||||||| ||||| |||||||| || || Sbjct 54101125 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 54101184 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || || ||||| | |||||| ||||| || || ||| | |||||| || Sbjct 54101185 ATTTGGAAGCCATAGAAACAGCGTGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTC 54101243 >seq19 Length=38427206 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || |||||||||||||||||||| || || | ||| | Sbjct 3916225 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 3916284 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | | ||| |||||||| || |||||||| || ||||| || ||||| ||||| || || | Sbjct 3916285 TTAACCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 3916344 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 3916345 CAACCACTCTTTCCCC 3916360 Score = 93.3 bits (102), Expect = 6e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| | Sbjct 3927090 TACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 3927149 Query 47187 ATATTGGATCGGAAAAATAACAAATC 47212 || ||||| |||||||| ||||||| Sbjct 3927150 GTACTGGATTGGAAAAATGACAAATC 3927175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712804797437760