Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq83 127 5e-24 seq138 111 4e-19 seq9 111 4e-19 seq30 93.3 1e-13 seq25 93.3 1e-13 seq91 87.8 4e-12 >seq83 Length=7591375 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || || || || || || ||||| || ||||||||||| |||| | || Sbjct 414033 CTGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 413974 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||| ||||| || || ||||| ||||| | |||||||||||| | | ||| || Sbjct 413973 CGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCC 413914 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || |||||| |||| | | |||| ||| ||| || || Sbjct 413913 TCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCC 413857 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || |||||||| || ||||||||||||| ||||||| Sbjct 413856 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATT 413812 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| |||| | || | ||| ||| Sbjct 414252 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 414193 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | |||||||||||| | | ||| || ||||| ||| Sbjct 414192 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCT 414133 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 414132 TGGATCTTCGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 414076 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || ||||||||||||| |||||| Sbjct 414075 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 >seq138 Length=1287892 Score = 111 bits (122), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| ||||| |||||||| | | ||| | |||||| Sbjct 343415 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTACGGCCATCT 343474 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || || ||||| |||||||||||||| | | || ||||| || || Sbjct 343475 TCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCC 343534 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| || || || || || Sbjct 343535 TGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 343591 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || |||||||| |||| ||||||||| Sbjct 343592 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 343629 >seq9 Length=54061371 Score = 111 bits (122), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| ||||||||||| || | | ||| | |||||| Sbjct 30845436 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 30845377 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || ||||| || || Sbjct 30845376 TCCAGCAGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 30845317 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAG 152070 || || || || ||| |||| | | ||| |||| ||| | || || || |||| Sbjct 30845316 TGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGA--GCTCCATCTCCAGGGTGATAG 30845259 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| || || ||||||| |||| ||||||||| Sbjct 30845258 TCTTGCCAGTCAGGGTCTTCATAAAGATCTGCATTTT 30845222 >seq30 Length=30016984 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/203 (71%), Gaps = 7/203 (3%) Strand=Plus/Minus Query 151905 AGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTC 151964 ||||| || ||||| |||||||||||||| | | ||| | ||||| || || ||| Sbjct 13544494 AGAGTGGATTCTTTCTGGATGTTGTAATCTGGGAGAGTGCGGCCATCCTCCAGCTGTTTA 13544435 Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || || || || ||||| || | ||||| || ||| | ||||||| ||| | Sbjct 13544434 CCTGCAAATATCAGATGCTGCT-ATCAGGTGAGATGCCCTCCATGTCTTGAAATTTCGCT 13544376 Query 152025 TTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||| |||| | | |||| ||| ||| || | || || || || ||||| || Sbjct 13544375 TTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTTGAGGGTGATGGTCTTGCCTGTC 13544319 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| |||| |||||| Sbjct 13544318 AGGGTCTTCACAAAGATCTGCAT 13544296 >seq25 Length=31340621 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || || ||||||||||| || ||||| || || |||||||| || | ||||| | Sbjct 4762693 AGCCTCAGCACAAGATGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGT 4762752 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || ||||| || | | || | ||||| Sbjct 4762753 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAG-GAATTCTTCC 4762811 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || ||| ||| | |||| |||| || || || || || ||| Sbjct 4762812 TTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTA 4762871 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || || || || || || | |||||| Sbjct 4762872 TTAGTCTTCCCTGTAAGGGTTTTTACAAAAATCTGCAT 4762909 >seq91 Length=6382753 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || || ||||||||||| || ||||| || | |||| ||| || | || || | Sbjct 364185 AGCCTCAGAACAAGATGAAGGGTGGACTCCTTCTAAATGTCGTAGTCAGACAAGGTACGT 364244 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| || || || ||||| || || | ||| || | | ||||||||| Sbjct 364245 CCATCTTCTAGTTGCTTACCAGCAAAGATGAGACTTTACTGATCAGGAGGAATTCCTTCC 364304 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || | || || || ||| ||| | |||| ||| || || || || |||||| Sbjct 364305 TTATTCTGGATCTTGGCTTTTACATTTTCTATAGTGTTGGAGGGTTCAACCTCGAGAGTA 364364 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||| | || || || | ||| | |||||| Sbjct 364365 ATAGTCTTCCCCATAAGGGTTTTTAAGAAAATCTGCAT 364402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153605806046353