Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq83 165 6e-36 seq138 107 1e-18 seq9 102 6e-17 seq17 95.1 9e-15 seq30 82.4 5e-11 >seq83 Length=7591375 Score = 165 bits (182), Expect = 6e-36 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 414043 CATCCCACCTCTGAGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 413984 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || |||| |||| ||||||||||| |||||||||||||| | |||||| || | Sbjct 413983 GGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGG 413924 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| || |||||| ||| | | | |||||||| || || Sbjct 413923 GGGGATGCCCTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTC 413864 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 |||||||| || || ||||| ||||| ||||||||||||||||| ||||| || Sbjct 413863 CACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATTAT 413810 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| | || ||||||||| || ||| |||||| ||||||||||| |||| Sbjct 414267 CCTCCCCTCAAGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 414208 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| ||||||||||| |||||||||||||| | |||||| || | || Sbjct 414207 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 414148 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| || |||||| ||| | | | |||||||| || |||||| Sbjct 414147 ATGCCCTCCTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 414088 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| ||||| ||||||||||||||||| ||||| Sbjct 414087 TCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 >seq138 Length=1287892 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || ||| ||| || ||||| |||||||| | Sbjct 343400 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAA 343459 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || |||| |||||| || |||||||| | | |||||| || | || Sbjct 343460 AGAGTACGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 343519 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||||| || ||| ||||| ||||| | | |||||||| || |||||| Sbjct 343520 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 343579 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || ||||||||||| ||||| ||||| Sbjct 343580 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 343626 >seq9 Length=54061371 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| ||| || ||||||||||| || | || ||| | || ||| Sbjct 30845433 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 30845374 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||| |||| || |||||||| | | |||||| || | ||| | ||||| || ||| Sbjct 30845373 AGCAGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGG 30845314 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||| | |||| ||||| || || ||||| Sbjct 30845313 ATCTTAGCCTTCACATTCTCAATGGTGTCACTGAGCTCCATCTCCAGGGTGATAGTCTTG 30845254 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||||| ||||| ||||| Sbjct 30845253 CCAGTCAGGGTCTTCATAAAGATCTGCAT 30845225 >seq17 Length=43943611 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || ||| ||| || ||||||||||| || | Sbjct 21311322 CCACCCCTCAGACGAAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 21311381 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || |||||||||| ||| ||||| || | | |||||| || | || Sbjct 21311382 AGAGTGCGGCCATCTTCCAGCTGCTCCCCTGCAAATATGAGTCTCTGCTGGTCAGGGGGA 21311441 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||||| | ||| ||||| ||||| | | ||| |||| || |||||| Sbjct 21311442 ATGCCTTCTGTATCCTGGATCTTGGCCTTCACATTCTCAATGATGTCATTGGGCTCCACC 21311501 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | ||||| || || ||||| ||||| ||||| ||||| Sbjct 21311502 TCCAGGGTGGTGGTCTTGCCAGTCAGGGTTTTCACAAAGATGTGCAT 21311548 >seq30 Length=30016984 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || |||||||| | ||||| || || ||| || || |||||||||||||| Sbjct 13544524 ATGCCACCTCTCAGGTGAAGCACCAAGTATAGAGTGGATTCTTTCTGGATGTTGTAATCT 13544465 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | ||| ||| | || |||||||| || || ||||| |||| | |||||| ||| | Sbjct 13544464 GGGAGAGTGCGGCCATCCTCCAGCTGTTTACCTGCAAATATCAGATGCTGCT-ATCAGGT 13544406 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286 | | || ||| | | | | | || |||| | ||| | |||||||| || || Sbjct 13544405 GAGATGCCCTCCATGT-CTTGAAATTTCGCTTTGACATTCTCGATGGTGTCACTGGGCTC 13544347 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || || ||||| || || ||||||||||| ||||| ||||| Sbjct 13544346 GACCTTGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 13544296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359926594289031