Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq30 172 8e-38 seq48 91.5 2e-13 >seq30 Length=30016984 Score = 172 bits (190), Expect = 8e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| | |||| ||| ||| ||||||||||| ||||| || ||||| ||||| Sbjct 8153329 GTCTGGAACAATCGCTCATCATCCCACTCTGGATGTTCCTGTTTAAGCACATCACACACT 8153270 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| |||||||| ||||| |||||||| || ||||| || || ||||| Sbjct 8153269 CTGTTATGTTCCCGTAGCCAGATTGTGGCATACATCATCAGACCAGGCACAAGACCAAAG 8153210 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | || | || ||| || | | || || |||||||| | | Sbjct 8153209 ACCTCCTGCCCCACAGCAAACCGAAGGTGTTCAGGGATGTGAGGGGGGTAGATCATCTCC 8153150 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCTG 9485 ||||| ||||||||| | ||| ||||||| || || |||||| ||| Sbjct 8153149 ACCTGAGTGTCTTTGACTGTGGGAGGATACACCTCTCCACCAATCACCTG 8153100 Score = 123 bits (136), Expect = 4e-23 Identities = 209/303 (69%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | | | || ||||| ||||| ||||| | |||| || |||||||| | Sbjct 8155039 GAACACTGAATGAGACGAAGGGACAGCCCTTCACGTTACGGCAGATGAGGGACTGAATTG 8154980 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | || | |||| || ||||| ||||| || || ||||| |||||||| || Sbjct 8154979 AGGCAGTGTTAATGATCTTAAAGCCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAATAGT 8154920 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 || || || || || ||| || ||||| | |||||| || || || | || | Sbjct 8154919 GAGGAGAACATATAGGATTACCCAAAAGTCCTTTCAAGGAGAATGGTGCTCCAATTTCCA 8154860 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| ||||||| |||||||| | ||||| ||||||||||||| || | | || | Sbjct 8154859 CCATGGTCTCACCAAAGATGGCATCAGGACGAGGCTTTTCCACCAGGAGGGCAGGATAGA 8154800 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 ||||| || || | ||| || || || || | || || || || |||||||||| Sbjct 8154799 ACTCCATGGCATCAATGTCACCATAGAGTGCTTCCAACTCTGCGGCCATTTCCTTTTCTC 8154740 Query 8583 CTG 8585 ||| Sbjct 8154739 CTG 8154737 Score = 102 bits (112), Expect = 1e-16 Identities = 207/300 (69%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || |||||| | ||||| || || || | |||||||| || || | Sbjct 8153900 CTTACCCTGCCAGCAATTTGTCTGGTGAATGACTCAACGAACTGGGTAAGTCCATGTTCC 8153841 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | |||||| |||||||||| || ||| | |||| |||| | || ||| | Sbjct 8153840 AGTAATATGGAGTTGTTGTAGAGAAACTGTTGA--TAGTTGTACTCCTGGTCATGAATTT 8153783 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| | || |||| || | |||||||||||| | |||||||||| ||| |||| Sbjct 8153782 GAAAGGTGTCAGGCAAAAGGGGATGCCAGTGATAAAGTGTGTTAAACTCAGAAGCAATAC 8153723 Query 9122 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAA 9180 | |||||||||||||| | | ||| ||||| || || | |||| || | || Sbjct 8153722 GGTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTGAGTTTGAAG 8153664 Query 9181 TGGTAGCCGCTGAGCTGCTGAACGTATTGCGTC-ACGATAATGTTGATGGTTTCCCCGAT 9239 || || ||||| | ||||| ||||| | | || | | ||| || ||||| ||||| || Sbjct 8153663 TGATACCCGCTCAAGTGCTGGACGTAGT-CTTCAATCACAATTTTAATGGTCTCCCCTAT 8153605 >seq48 Length=15743623 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| || || || ||| ||| ||| || Sbjct 8807046 TCACCTATGAGGATGAGACGGGTGGTCTGGAAGAGCTGTTCATCATCCCAGGTTGGGTGC 8807105 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||||| | || ||||| | |||||| || | ||||||| ||||| || | | Sbjct 8807106 TCGGCTTTCAGCAGGTCACACACGCGGTTGTGCTCGCGCAGCCAGAGTGTGGCATAGAGC 8807165 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 |||||||| || | ||| ||||| |||| || || || |||| Sbjct 8807166 ATGAGCCCGGGAAGCAGCCCAAACACCTCCTGGCCCACCGCCA 8807208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716746480758720