Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq39 98.7 1e-15 >seq39 Length=19578880 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/177 (74%), Gaps = 5/177 (3%) Strand=Plus/Minus Query 63720 TAAAATAAAATTAAGATCTTCTAAAATACCAGAAATAGGTGATAAATTTGCTTCTTTTAC 63779 |||||||| || | ||| || ||| ||| |||| || || ||||||||| | || Sbjct 6381984 TAAAATAAGGGTACGCTCTGTTAGAATTCCACAAATTGGAGACAAATTTGCTAGTCG-AC 6381926 Query 63780 A-GCTCAAAAAGGTACGTGTGGTATGATTTATCGACAAGAAGATATGCCTTTTACCAAAG 63838 | | ||| || ||||| |||||||| ||| ||||||| ||||||||||||||| | Sbjct 6381925 ATGGTCAGAAGGGTACCTGTGGTATTCAGTATAGACAAGAGGATATGCCTTTTACCTGTG 6381866 Query 63839 ACGGTATCGTACCC--GATCTCGTCATCAATCCACACGCTTTTCCCAGTCGTATGAC 63893 | ||||| ||||| ||| || |||| ||||| || || ||||| ||||||||| Sbjct 6381865 AAGGTAT-TTACCCCTGATATCATCATAAATCCCCATGCCATTCCCTCTCGTATGAC 6381810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666953934067080