Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq30 111 4e-19 >seq30 Length=30016984 Score = 111 bits (122), Expect = 4e-19 Identities = 146/199 (73%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || ||||||||| |||| || || ||| Sbjct 13544299 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTCAAGGTCGA--GCCCAGTG 13544356 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| || |||| |||| || || ||| | || || ||| Sbjct 13544357 ACACCATCGAGAATGTCAAAGCGAAATTTCAAGACATGGAGGGCATCTCACCTGA-TAGC 13544415 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || |||||||| || ||||| | ||||| | ||||| ||| Sbjct 13544416 AGCATCTGATATTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCCCAGATTACAACA 13544475 Query 178102 TCCAAAAAGAATCAACACT 178120 |||| |||||||| || || Sbjct 13544476 TCCAGAAAGAATCCACTCT 13544494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203506906132342