Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq83 159 3e-34 seq138 102 8e-17 seq17 89.7 5e-13 >seq83 Length=7591375 Score = 159 bits (176), Expect = 3e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| ||||| ||| ||||||||| ||||| |||||||| ||||||||| Sbjct 414030 AGACGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGC 413971 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||||||||| || |||| | ||| ||||| | ||| | || |||| Sbjct 413970 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCC 413911 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||||||||||| || Sbjct 413910 TTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 413851 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || |||||||| ||||| ||||| |||||||| Sbjct 413850 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 413813 Score = 154 bits (170), Expect = 1e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||| ||||| ||| ||||||||| ||||| |||||||| ||||||||| |||| || Sbjct 414250 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTC 414191 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 |||||||||||||| || |||| | ||| ||||| | ||| | || ||||||||| Sbjct 414190 CAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCTTG 414131 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| || ||| | | | ||||| || | ||||||||||| || || || || Sbjct 414130 GATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 414071 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| ||||| ||||| |||||||| Sbjct 414070 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 414041 >seq138 Length=1287892 Score = 102 bits (112), Expect = 8e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| ||| ||| ||||| || || || || Sbjct 343396 ACAGCCACCCCTCAGACGAAGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATC 343455 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || || || | || || | ||||||||| || || || || | ||| ||||| | Sbjct 343456 AGAAAGAGTACGGCCATCTTCCAACTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGG 343515 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| || || || ||| ||| || ||||| | | ||||| || | ||| Sbjct 343516 GGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTC 343575 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| || || || || || ||||| ||||| || || |||||||| || Sbjct 343576 CACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 343629 >seq17 Length=43943611 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| ||| ||| ||||| ||||| ||||| Sbjct 21311318 ACAGCCACCCCTCAGACGAAGAACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 21311377 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||| || || ||||| || | ||| ||||| | Sbjct 21311378 AGAAAGAGTGCGGCCATCTTCCAGCTGCTCCCCTGCAAATATGAGTCTCTGCTGGTCAGG 21311437 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||||| || || | ||| ||| || ||||| | | |||| | | ||| Sbjct 21311438 GGGAATGCCTTCTGTATCCTGGATCTTGGCCTTCACATTCTCAATGATGTCATTGGGCTC 21311497 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 |||||||| || | || || || ||||| || || || || || ||||| || || Sbjct 21311498 CACCTCCAGGGTGGTGGTCTTGCCAGTCAGGGTTTTCACAAAGATGTGCATTTTGTC 21311554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462219958911600