Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq572 168 5e-37 seq175 129 4e-25 seq119 129 4e-25 >seq572 Length=781869 Score = 168 bits (186), Expect = 5e-37 Identities = 317/465 (68%), Gaps = 21/465 (5%) Strand=Plus/Minus Query 3978 CTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAAC 4037 ||| ||||| ||||||||||| |||| ||| || || || || | | |||||| || Sbjct 682937 CTTTTCATAGACTTCAAATTTATACTCAATGGCCTTTTCCTCCTGGGCCTCAGAAAGGAC 682878 Query 4038 ACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTC 4097 || ||| ||| | | ||||| |||| || | | || || |||| | || | || Sbjct 682877 ACCTGGGGATTGCAGGAGAAGTTCGTATCTCCCCAAATAAATTTCTCAGAGAACTGAGTT 682818 Query 4098 ACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157 | ||| || ||||| ||||| ||| ||||| |||| || ||| | |||| Sbjct 682817 GCCTTCTGTTTCCTGCATAATCCTTGTC----ACAGTCTAAGGCAGCCTGGCCGATTCAT 682762 Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATT------ 4211 || || | ||||||||| | |||| | | |||| ||||||||||||||||| Sbjct 682761 CCCTCCTCTGTACACAGAAGTGCCTCTGACTGTCCAAACCATGTCTACTTTATTTATTTT 682702 Query 4212 -TGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAAT 4270 | ||||||||| |||| |||||| ||| ||| | ||| ||| || || | ||| Sbjct 682701 ATTTTAATTCTGGTTGTTTAATAAGTTCTAAGGCACCGTCTGGACTTTTGGCAAGGAAAC 682642 Query 4271 GAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTA 4330 ||||| ||||| | ||||| || | |||| ||| | ||||||| ||| ||| Sbjct 682641 AAGCTCCTTGTGGTGGTTCCTTGAG-----TACTGAAAACTATGCTAATTCTCCCTCTTA 682587 Query 4331 AAGGCCGGTTCTTCTCAGGAATTGAG----AACCAAGTCTTT-TTACCCATAATCACTAA 4385 |||| |||||||||||||| ||| |||||||||| |||||||||||| | Sbjct 682586 AAGGTTCATTCTTCTCAGGAATGGAGTCTTTCCCAAGTCTTTCCCACCCATAATCACCAG 682527 Query 4386 ATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAA 4430 | |||| | || || ||||| || || | ||||||| |||| Sbjct 682526 GTCCTGTGCACCTTCCACTGAAGAGGTTGTGGCCATTCTTAGGAA 682482 >seq175 Length=1401615 Score = 129 bits (142), Expect = 4e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAA 27011 || |||| | |||||| |||||||| ||| ||| |||||||| || |||| || ||| Sbjct 703931 ACGATGGAGGAAACGCAGGTGCAGCCCACACCCACGAGCATCTTATCCAGCCGGAAGGAA 703990 Query 27012 TTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAG 27071 || || | | || | | |||| || || |||||||| ||||| | || ||| Sbjct 703991 AAGGGACACTTCTCAGGCTCCCTCCGCAGGACCAGGATCTCTTGCTGGATGAGAACAGAG 704050 Query 27072 TTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCT 27131 |||||||||| ||| | ||||| || ||||| ||||| | || || |||| ||| Sbjct 704051 TTCATGTGGTGGTCCAGTTTCCCCTCTGCATTGACACAGCGCTGGTGACGGCACTGTGCC 704110 Query 27132 TCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||| ||||||||||| |||||||| | || |||||||| Sbjct 704111 TCCCAGATCACAGAGGGGTATCTATCGGGGTCCTCATTGCG 704151 >seq119 Length=1622055 Score = 129 bits (142), Expect = 4e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || || |||||||| || || | |||||| | |||||||||| |||||||||| |||||| Sbjct 237481 TTGTAAACAGAACTGCCCCCGACTATCCAAATCATGTCTACTATATTTGCTAACTCTGGC 237422 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 ||||| ||||||||||||||||||| | ||| ||||| | ||||||||||| ||||| Sbjct 237421 TGTTCAATAAGTTTTAAAGCATCATCCAGACTTTTAGCAAGAAAATGAGCTCCTTGTGG 237363 Score = 116 bits (128), Expect = 3e-21 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 229348 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 229289 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || ||| ||||||| ||||| | |||||||||| || Sbjct 229288 AATGGAGAACCAGGTTTTTCTACCCATTATCACCAGATTCTGTTTACCT 229240 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||| | | ||||| |||||||||||| ||||||| |||||| || ||||| Sbjct 239194 AAGTTTATATTTTCCCAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCAT 239135 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTC 4163 ||||| |||||||| ||| | |||| || ||| | | |||| ||||| Sbjct 239134 GATCCGTGTCACAAAGAGTCTGAGATGGCCTGGCTGATTCATGGCTTC 239087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360948321688043