Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq41 123 3e-23 seq6788 113 5e-20 seq847 107 2e-18 seq525 84.2 3e-11 >seq41 Length=2266706 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| ||||| | || ||||||||||| || |||||||| || || ||||| | Sbjct 1099975 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGCCCCCGCTTCT 1099916 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||| ||||| ||||||||||| || ||||||| Sbjct 1099915 TGAGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCTACCGCTGCAAAGG 1099856 Query 24277 C 24277 | Sbjct 1099855 C 1099855 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/145 (73%), Gaps = 5/145 (3%) Strand=Plus/Minus Query 23783 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 23838 |||| ||| |||||| |||| || | |||| ||| || |||| ||||| || | Sbjct 1101587 GTTTACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCCG-TTGAACTTGACATCACAC 1101529 Query 23839 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 23898 |||| | ||||| || || || || || || || || || || || ||||||| ||| | Sbjct 1101528 CCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 1101469 Query 23899 TATTTTCCATGAAATCGGATGGATT 23923 ||||||||||||| || ||||||| Sbjct 1101468 TATTTTCCATGAAGTCAAATGGATT 1101444 >seq6788 Length=68851 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || || |||||||| ||||| ||||| |||||||| || ||||| || || ||||| | Sbjct 46065 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTAGTGTAAGGTTCAATG 46124 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || |||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 46125 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 46184 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 46185 CTGTTTCTTATACCATA 46201 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440 ||||| ||||||| || || || || | || || || || ||||| || || || | Sbjct 49101 GATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAGCTTGCTTCCAGG 49160 Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500 || ||||||||||| ||||| ||||||| |||||| || || ||||| |||| ||| Sbjct 49161 GCTCCGTAATAAATAGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCTGGGCTCTCA 49220 Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560 || ||||| | | | ||| || || ||||||| ||||| || ||||| || ||||| Sbjct 49221 AAGGGATACCTCATCAAAATGAAAGCATCTGCTAGGCCTTGTACCCCAATTCCAATAGGC 49280 Query 53561 CTATGTCTCTTATTAGA 53577 | ||| | ||||| || Sbjct 49281 CGATGGCGTTTATTTGA 49297 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 52119 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 52178 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 52179 CTGTTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 52238 Query 54145 CGGTTCCAAGTATATGG 54161 || |||| ||| |||| Sbjct 52239 AGGCTCCAGGTAAATGG 52255 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || || || |||||||| || |||||| || | || || || ||||| || | Sbjct 43241 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGTATGT 43300 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 43301 TTAGAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 43360 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||| ||||| | |||| | || || |||| Sbjct 43361 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 43411 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | |||||||| || || |||||||| | ||||||||||| ||| Sbjct 59101 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGAAAGTAGGTTG 59160 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || || || || || | || ||||| || ||||| || || | || | ||| | | Sbjct 59161 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAGC 59220 Query 54545 ATGTGCTGAGGTCTTTCA 54562 || ||||| ||||||||| Sbjct 59221 ATATGCTGTGGTCTTTCA 59238 >seq847 Length=614715 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | || || ||||| || ||||| ||||| ||||| | ||| || Sbjct 68526 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 68585 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| |||||||| ||||||||||||||||| || |||||||| Sbjct 68586 AGCCAGAATATAGCAGCAAACGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 68645 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 68646 ACCACTCTTTCCCC 68659 >seq525 Length=811145 Score = 84.2 bits (92), Expect = 3e-11 Identities = 210/311 (68%), Gaps = 16/311 (5%) Strand=Plus/Plus Query 154833 TCTCATCTTTTGCCAACACAGAGGGTGGATATTTGTTCATTGGATTGGATAATAATACAC 154892 |||| ||||||| ||||| | || ||||||||||||||||| |||||| || | || Sbjct 723550 TCTCTGCTTTTGCAAACACGAAAGGGGGATATTTGTTCATTGGTTTGGATGGGAAGAAAC 723609 Query 154893 ACAAAGTAATTGGATTCATGGCGGGACACGACTG-CATTAAACTGATAGAGAATGAGATA 154951 | || ||||||| || || || | || || ||| | |||||| ||| ||| Sbjct 723610 AGCAAATAATTGGTTTTGAAGC-AGAGAAGAGTGATCTTATGCATCTAGAGAGTGAAATA 723668 Query 154952 GAAAAGTGTATTAGACGACT-CATGTTGTACATTTCTGTGA-GAAAAAGAGGATATCAAA 155009 |||||||| | ||| || | ||| || |||||||| || || ||| | || || Sbjct 723669 GAAAAGTGCGTCCGACAGCTGCCTGTCACTCACTTCTGTGAGGAGAAGGAGAACATAAAG 723728 Query 155010 TACGCATATAGATTCATCAAGGTATATAAACCTGGGGAGGAGACTACCTCGACATACGTG 155069 ||| | | ||||||||| | || | | ||| ||||| || | | | || || Sbjct 723729 TACACGTGCAGATTCATCGAAGTGCACAGACC-----AGGAG-CTGCATGTTCGTATGTC 723782 Query 155070 TGCGCTATCAAAGTGGAAAGATGTTGCTGTGCTGTGTT---TACAGATTGGCCAGAATCA 155126 || || | | |||||| |||| |||||||| ||||| | |||| ||| || || Sbjct 723783 TGTGCGCTGAGAGTGGAGAGATTCTGCTGTGCAGTGTTCGCTGCAGA---GCCCGAGTCC 723839 Query 155127 TGGTATATGGA 155137 ||| || |||| Sbjct 723840 TGGCATGTGGA 723850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593211051374640