Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq4189 260 2e-64 seq3821 138 1e-27 seq276 136 5e-27 seq550 86.0 7e-12 >seq4189 Length=135085 Score = 260 bits (288), Expect = 2e-64 Identities = 598/889 (67%), Gaps = 25/889 (3%) Strand=Plus/Plus Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546 || ||||| || |||| | |||||||| | | || ||| | || |||||| || Sbjct 5477 CTGGTGTTCATCATTGGCCTCCTGGGCAATGTGGTGGTTGTGTTGATCCTCATAAAGTAT 5536 Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606 | |||| | ||| | ||||| || | ||| | ||||||||||| |||||| |||| Sbjct 5537 AGGAAGCTACAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGACCTGCTT 5596 Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 9666 ||||| || || | ||||| ||||| |||||| || | || | |||| ||| |||| Sbjct 5597 TTTCTCTTCACCATCCCATTCTGGATTCACTATGTTATA-TGGA--ATGAGTGGTGTTTT 5653 Query 9667 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726 || | | |||||||||||||| || | | |||| || | | |||||| || || Sbjct 5654 GGCCATCACATGTGTAAACTGCTCTCTGGGTTTTATTACCTGGCCTTATACAGCGAGATC 5713 Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTG-- 9784 |||| |||||| ||||| ||| | |||||||| | ||| ||||| ||||||| || Sbjct 5714 TTTTTCATCATTCTGCTGACAATTGACAGGTACTTGGCTATTGTCCATGCTGTGTTTGCC 5773 Query 9785 CTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGG 9844 ||| ||| | | ||||| || | || | | ||| | | ||||||| |||| Sbjct 5774 CTTCGAG--CTCGGACAGTCACTTTTGCTACTATCACCAGCATCATCACCTGGTGCCTGG 5831 Query 9845 CAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGG 9904 |||| || | | ||||||||| ||||| ||| | ||||| || ||| || Sbjct 5832 CAGGACTGGCAGCATTTCCTGAATTTATCTTTTATGAATTTCAAGACAACTTTGG-AGAA 5890 Query 9905 TTC-AGTGTGATCCTTACTACCCAGA----GATGTCTACAAATGTTTGGAGGCGCGCCCA 9959 | | || ||| | |||||||| || | |||| |||| ||| ||| Sbjct 5891 TCCTTCTGCAGCCCTCATTACCCAGAAGGTGAAGAGGACAA----CTGGAAGCGTTTCCA 5946 Query 9960 CGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTA 10019 | | || ||| ||| || || | | | ||||| |||||||||| | ||||||| Sbjct 5947 TGCTCTAAGAATGAATATCTTTGGTTTGGCTCTCCCTCTCCTCATTATGGTTATCTGCTA 6006 Query 10020 CTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAG 10079 || | ||| || | || || |||| |||||| || || || ||||||| ||| | Sbjct 6007 CTCAGGAATCATTAAAACTCTCCTGAGATGCCCCAATAAAAAAAAACACAAGGCTATCCG 6066 Query 10080 GCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCT 10139 || || ||||| ||||| | | || |||| |||||||||| || |||||| | ||||| Sbjct 6067 CCTTATTTTTGTTGTCATGATAGTCTTTTTTATTTTTTGGACTCCATACAACCTGGTTCT 6126 Query 10140 CCTACTGTCTACCTTTCAC-GCAACCCTTCTT---AACCTGCAGTGTGCATTGAGCAGTA 10195 ||| || ||| | |||||| ||| | || || | | || || ||| ||||| Sbjct 6127 CCTTCTCTCTGCTTTTCACAGCA--CATTTTTGGAGAACAGCTGTCAGCA--GAGCAAAC 6182 Query 10196 ACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACC 10255 || ||||| |||| ||| | | || | | |||||||| ||||| || ||||| | Sbjct 6183 ACCTGGACCTGGCCATGCAGGTGACTGAGGTGATTGCCTACACCCACTGCTGTATCAATC 6242 Query 10256 CAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACA 10315 || | ||||| || || || || |||| ||| | | ||| || | ||| ||||||| Sbjct 6243 CAATCATCTATGCCTTTGTTGGAGAGAGGTTCCGGAAACATCTTCGGCTCTTTTTCCACA 6302 Query 10316 CCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364 | ||||| |||||||| | || || || || ||||| ||||||| Sbjct 6303 GACATGTGGCAATCTACCTGGGGAAATATATTCCATTCCTTCCTGGTGA 6351 Score = 260 bits (288), Expect = 2e-64 Identities = 598/889 (67%), Gaps = 25/889 (3%) Strand=Plus/Plus Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432 || ||||| || |||| | |||||||| | | || ||| | || |||||| || Sbjct 5477 CTGGTGTTCATCATTGGCCTCCTGGGCAATGTGGTGGTTGTGTTGATCCTCATAAAGTAT 5536 Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492 | |||| | ||| | ||||| || | ||| | ||||||||||| |||||| |||| Sbjct 5537 AGGAAGCTACAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGACCTGCTT 5596 Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 176552 ||||| || || | ||||| ||||| |||||| || | || | |||| ||| |||| Sbjct 5597 TTTCTCTTCACCATCCCATTCTGGATTCACTATGTTATA-TGGA--ATGAGTGGTGTTTT 5653 Query 176553 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612 || | | |||||||||||||| || | | |||| || | | |||||| || || Sbjct 5654 GGCCATCACATGTGTAAACTGCTCTCTGGGTTTTATTACCTGGCCTTATACAGCGAGATC 5713 Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTG-- 176670 |||| |||||| ||||| ||| | |||||||| | ||| ||||| ||||||| || Sbjct 5714 TTTTTCATCATTCTGCTGACAATTGACAGGTACTTGGCTATTGTCCATGCTGTGTTTGCC 5773 Query 176671 CTTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGG 176730 ||| ||| | | ||||| || | || | | ||| | | ||||||| |||| Sbjct 5774 CTTCGAG--CTCGGACAGTCACTTTTGCTACTATCACCAGCATCATCACCTGGTGCCTGG 5831 Query 176731 CAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGG 176790 |||| || | | ||||||||| ||||| ||| | ||||| || ||| || Sbjct 5832 CAGGACTGGCAGCATTTCCTGAATTTATCTTTTATGAATTTCAAGACAACTTTGG-AGAA 5890 Query 176791 TTC-AGTGTGATCCTTACTACCCAGA----GATGTCTACAAATGTTTGGAGGCGCGCCCA 176845 | | || ||| | |||||||| || | |||| |||| ||| ||| Sbjct 5891 TCCTTCTGCAGCCCTCATTACCCAGAAGGTGAAGAGGACAA----CTGGAAGCGTTTCCA 5946 Query 176846 CGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTA 176905 | | || ||| ||| || || | | | ||||| |||||||||| | ||||||| Sbjct 5947 TGCTCTAAGAATGAATATCTTTGGTTTGGCTCTCCCTCTCCTCATTATGGTTATCTGCTA 6006 Query 176906 CTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAG 176965 || | ||| || | || || |||| |||||| || || || ||||||| ||| | Sbjct 6007 CTCAGGAATCATTAAAACTCTCCTGAGATGCCCCAATAAAAAAAAACACAAGGCTATCCG 6066 Query 176966 GCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCT 177025 || || ||||| ||||| | | || |||| |||||||||| || |||||| | ||||| Sbjct 6067 CCTTATTTTTGTTGTCATGATAGTCTTTTTTATTTTTTGGACTCCATACAACCTGGTTCT 6126 Query 177026 CCTACTGTCTACCTTTCAC-GCAACCCTTCTT---AACCTGCAGTGTGCATTGAGCAGTA 177081 ||| || ||| | |||||| ||| | || || | | || || ||| ||||| Sbjct 6127 CCTTCTCTCTGCTTTTCACAGCA--CATTTTTGGAGAACAGCTGTCAGCA--GAGCAAAC 6182 Query 177082 ACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACC 177141 || ||||| |||| ||| | | || | | |||||||| ||||| || ||||| | Sbjct 6183 ACCTGGACCTGGCCATGCAGGTGACTGAGGTGATTGCCTACACCCACTGCTGTATCAATC 6242 Query 177142 CAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACA 177201 || | ||||| || || || || |||| ||| | | ||| || | ||| ||||||| Sbjct 6243 CAATCATCTATGCCTTTGTTGGAGAGAGGTTCCGGAAACATCTTCGGCTCTTTTTCCACA 6302 Query 177202 CCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250 | ||||| |||||||| | || || || || ||||| ||||||| Sbjct 6303 GACATGTGGCAATCTACCTGGGGAAATATATTCCATTCCTTCCTGGTGA 6351 >seq3821 Length=151595 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||| |||||| ||| |||| ||||||||| ||||||| |||||||| || ||||||||| Sbjct 45566 AGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATATTGAAGGGC 45507 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || ||||| || || || | |||||| |||||||| || ||||| || | || Sbjct 45506 ACGCCTAGACCCATATCACCTGACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACC 45447 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || |||||||| || ||| || ||||| ||||| ||||| Sbjct 45446 ACATAGAACTGACAGAGGGCATGACAGGGAGGCAGTGCCAT 45406 >seq276 Length=1137301 Score = 136 bits (150), Expect = 5e-27 Identities = 126/159 (79%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||| || |||||||| || | ||| || ||||||||||||| || ||| Sbjct 582906 CAGCGCCGCAGCTGCATTCTGAGGGTCTTCAACTTCTCTCCCAGGGAGTTCAAGTTCTCC 582965 Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199 || || |||| || ||||||||| |||||||||||||| || |||||||||||| Sbjct 582966 TTGATTTCTGG-----GCCGTGGTTCTCTGCCTGGGGCATCACTTCTACCAGGTAAAACT 583020 Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||| || || | ||| ||||| |||| |||||||| Sbjct 583021 GGATCATTTCTGATAAGGCTTGGCAACCCAAGTAACCCT 583059 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 |||| ||||||| || | |||||||| || |||||| |||| |||||||||||||| || Sbjct 580784 TCAGCTTTTCATTTTGATTGTCATGTATGCTTCTATGCAGTTGATGAAGATGTCAAATTC 580843 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||||||||||| ||||| || ||||||| Sbjct 580844 ATTCATGGCCTTGTAGACACCTTTCTCTTGGAGCT 580878 >seq550 Length=793625 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/203 (69%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 176463 CTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCAC 176522 ||||| ||| |||| || ||||| || | || |||| |||||||| || ||||| || Sbjct 703214 CTGTTGAACCTGGCGATCTCTGATCTGGTTTTCCTTTCCACTTTGCCTTTCTGGATTGAC 703155 Query 176523 TATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGT 176582 || | | || | | | |||| ||| ||| | || ||||||| || ||| || Sbjct 703154 TACAA---ACTGAAAGACAACTGGATTTTCGGTGATGCCATGTGTAAGCTCCTCTCTGGG 703098 Query 176583 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 176642 | | |||| || ||||||| || |||| | ||||||||||| || | |||||| Sbjct 703097 TTTTATTACCTGGGCTTGTACAGTGAGATCTTCTTTATCATCCTGCTGACGATTGACAGG 703038 Query 176643 TATCTAGCTGTTGTCTATGCTGT 176665 || ||||| ||||| |||| || Sbjct 703037 TACTTAGCTATTGTCCATGCAGT 703015 Score = 86.0 bits (94), Expect = 7e-12 Identities = 141/203 (69%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 9577 CTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCAC 9636 ||||| ||| |||| || ||||| || | || |||| |||||||| || ||||| || Sbjct 703214 CTGTTGAACCTGGCGATCTCTGATCTGGTTTTCCTTTCCACTTTGCCTTTCTGGATTGAC 703155 Query 9637 TATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGT 9696 || | | || | | | |||| ||| ||| | || ||||||| || ||| || Sbjct 703154 TACAA---ACTGAAAGACAACTGGATTTTCGGTGATGCCATGTGTAAGCTCCTCTCTGGG 703098 Query 9697 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 9756 | | |||| || ||||||| || |||| | ||||||||||| || | |||||| Sbjct 703097 TTTTATTACCTGGGCTTGTACAGTGAGATCTTCTTTATCATCCTGCTGACGATTGACAGG 703038 Query 9757 TATCTAGCTGTTGTCTATGCTGT 9779 || ||||| ||||| |||| || Sbjct 703037 TACTTAGCTATTGTCCATGCAGT 703015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589569385583720