Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq42 237 2e-57 seq154 143 3e-29 seq4642 107 2e-18 seq838 105 8e-18 seq174 105 8e-18 >seq42 Length=2247675 Score = 237 bits (262), Expect = 2e-57 Identities = 266/356 (75%), Gaps = 0/356 (0%) Strand=Plus/Minus Query 83038 GCCGCGCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCA 83097 ||||| || || ||| ||||| || || |||||||| || | | | ||| || | Sbjct 1159149 GCCGCCCGGCTGCTGGGACAGCAGCGCTTCTATGTCGGGTTCGATGTTGATGGTGCGGAA 1159090 Query 83098 GCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTT 83157 |||| |||||||||||||||| || ||||| ||||||| ||||||||||||||| Sbjct 1159089 GCGGCGGCTGTACCTGCGCACCGGGACACCGTCGCGGCCCACCAGGAACTTCTCGAAGTT 1159030 Query 83158 CCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217 |||||| | ||||||||||||||| || |||||| ||| || ||||||| ||| ||| Sbjct 1159029 CCAGGCAATGTCGTTGCGGCACACCGGGGACCAGATGATGTACTTGGGGTCGGTCATGAG 1158970 Query 83218 CGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATG 83277 || | ||||||||| |||||||||| |||||| || ||||||| ||||||||| || Sbjct 1158969 CGCATTGGGGTCGTCGCTGGGCGCCGGCAAGGCCTCCCGCAGGAAGGTGAAGAGCGGGTG 1158910 Query 83278 TGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTT 83337 ||| | ||||||| || ||||||||||| || | | ||||| || ||||| || Sbjct 1158909 CGCCTTCTCACCGTTCACGTCGCACTTCTCAAACAATGTGAAGTTGGGTTCGAACCCACC 1158850 Query 83338 CCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 || || ||||| | ||| |||| ||| ||||| | |||| ||| || |||| Sbjct 1158849 ACCGGGTCGGACATACTTGAGGGTGTTCAAAATCTCTTCGTTCTTGGCATTCTCCT 1158794 Score = 163 bits (180), Expect = 3e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| |||||||| || ||||| | ||| || |||| || |||| Sbjct 1158604 CCTGATGTCCGAACTGGTTGCACGGGAAACCGAGCACCATCAGGCCGCGAGGCCCCAGGC 1158545 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||| |||||||||| ||||| |||||| ||| | ||||||||||| || | Sbjct 1158544 GTCTCTGCAGGTCGTTCATCTCGGTGTAGTCCCGGGTGGTGGTGCCTCAGAGGGAGGCGA 1158485 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | | |||| | |||||| || || || || | Sbjct 1158484 CATTCTCGATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACGGGCTCCCCGCCCG 1158425 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||||| || ||||||| | |||| Sbjct 1158424 CCAGCGGGCGCGCGGAGAAGGAGAACAC 1158397 >seq154 Length=1454300 Score = 143 bits (158), Expect = 3e-29 Identities = 239/337 (71%), Gaps = 9/337 (3%) Strand=Plus/Minus Query 83063 GCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGC 83122 |||| |||||||||||| | | | ||| ||| || | ||||||| | ||| | |||| Sbjct 657503 GCCT-GATGTCGGGCTCGATGTTGATGGTTTGGAAGGTGCGGCTGTAGCGGCGGAAGGGC 657445 Query 83123 GTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACT 83182 || || | || | || ||||||||| |||||||||| ||||||| ||| | ||| Sbjct 657444 TCCCCCTCTGGCCCTATCAGGAACTTCTCAAAGTTCCAGGACACGTCGGAGCGTCGCACC 657385 Query 83183 GGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCC 83242 ||| |||||| ||||||| ||| ||| ||| ||| | | | ||||||| |||| | Sbjct 657384 GGACTCCAGGCGATGAGCTTGGGATCGGTCATGAGGGAGAACGGGTCGTCG-TAGGGGTA 657326 Query 83243 GG-CAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGC 83300 || ||| ||| ||| ||||||||| || || | | ||| ||||||||||| | Sbjct 657325 GGGCAGCTTATCTTTCAGGTAGGCGAAGACAGGGTGCTCGTTCTGC-CCGTTGACCTCAC 657267 Query 83301 ACTTCTCG--AAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||| | | ||||| | ||| | |||| | |||| |||||| ||||||| ||| || Sbjct 657266 ACTTTTGGGTAAGAG--TGAAGGTGGGCTGGTAGCCACGCCCAGGGCGGACGTACTTGAG 657209 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 | || |||||| ||||||| ||| |||||| Sbjct 657208 GCTGTTCAGGATCTCCTCATTCTGACAGTTCTCCTGG 657172 >seq4642 Length=118421 Score = 107 bits (118), Expect = 2e-18 Identities = 200/291 (69%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 83147 TTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGG 83206 ||||| ||| ||||||||| ||| | |||||||||||||||||| || || | | Sbjct 71405 TTCTCAAAGCTCCAGGCCATGTCATCGCGGCACACTGGAGACCAAATGCTGTACTTAGTG 71464 Query 83207 TCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGG-C 83265 | ||| |||| | | |||||| | ||||| ||| |||||| | ||||||| | Sbjct 71465 CTGTTCATGAGCACGGTGGGGTCGTCACCCGGCGCTGGCCAGGCCTCCCAAAGGAAGGTC 71524 Query 83266 GAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGG 83325 ||| ||||| | ||| | |||| || || || || ||||| | | | ||||| || Sbjct 71525 GAA-AGCGGTCGAGCCTTCTCACCATTTACTTCACAGTTCTCAATG----TCAAGTTGGG 71579 Query 83326 CTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGC 83385 | ||| || || |||| | | ||| |||||| || ||||| | |||| ||| Sbjct 71580 TTGGAACCCACCACCTGGACAGTTATACTTGAGGGAATTCAGAATCTCCTCTTTCTTGGC 71639 Query 83386 GTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCC 83436 || ||||| || | |||||| || || ||||| || || || | ||| || Sbjct 71640 ATTCTCCTGCTGCCTGAACTGATTGCATGGGAAACCGAGTACCATCAGGCC 71690 >seq838 Length=619165 Score = 105 bits (116), Expect = 8e-18 Identities = 133/177 (75%), Gaps = 8/177 (5%) Strand=Plus/Minus Query 83100 GGTGGCTGTACCTGCGCACGGG-CGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTC 83158 || |||||||||||||||| | || ||| | || |||| ||||||||| |||||| Sbjct 22105 GGCGGCTGTACCTGCGCACTGAACG---CGTTGGTGCC-ACCAGGAACTTCTCAAAGTTC 22050 Query 83159 CAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGC-TGGGGGTCGCTCACGAG 83217 ||||| | |||||||| |||||| |||||| | ||| || |||||||| | ||| Sbjct 22049 CAGGCAATGTCGTTGCAGCACACCGGAGACTAAATTATGTGCTTGGGGGTCAGCCCTGAG 21990 Query 83218 CGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGG 83274 | || |||||| ||||||||||||| | |||| || ||||||| | |||||| Sbjct 21989 C--ACTGCAGTCGTCACTAGGCGCCGGCAAGCCCTCCCGCAGGAAGGTAAGGAGCGG 21935 >seq174 Length=1402901 Score = 105 bits (116), Expect = 8e-18 Identities = 185/264 (70%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| || |||||| || || ||| Sbjct 606502 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTTGCCTCCCGCCTGC 606444 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 606443 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 606384 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| || ||||| ||| | | || |||| ||||| Sbjct 606383 GCGGCTCGCTGGGCAAGAAGCAG-CTGGACCCCGCCCGCATCAGGCTGATCCGCCACTAC 606325 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| ||||| || ||||| ||||| |||| ||||| ||| Sbjct 606324 GTGCAGCTGCTCTACCCGCGAGCCAAGAACGACCGCGTCTGGACTCTGGAGTTCGTGGGC 606265 Query 50648 TGCCTGGACGAGCGCTGCCGGCGC 50671 |||||||||||||| |||||| Sbjct 606264 AAGCTGGACGAGCGCTGTCGGCGC 606241 Score = 82.4 bits (90), Expect = 9e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 49919 TCCTCTCCCGGGGAGCTGGCGGTGCTCCTACTGCACAAGGTCTTCCAGGAGCTCTTTGAC 49978 |||||||| |||||| | |||||| |||| |||||| | |||||| |||||| || ||| Sbjct 606963 TCCTCTCCGGGGGAGTTTGCGGTGTTCCTCCTGCACCGGCTCTTCCCGGAGCTGTTCGAC 606904 Query 49979 GCGCGCCAGCTGCGCC-GCTGCTACAGCTGCTACGGCGACGGGCGCACGCATTGTCTGGA 50037 ||| ||||| || || | ||||||||||| ||||| || ||| ||| ||||| Sbjct 606903 CACCGCAAGCTGGGCGAGCAG-TACAGCTGCTATGGCGATGGCGGCAAGCAGGAGCTGGA 606845 Query 50038 CCCTGCGCGCCTGCAACTGATCCG 50061 || | | ||||| | ||||| Sbjct 606844 TCCCCAGAGGCTGCAGATCATCCG 606821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608273288021720