Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq245 134 1e-26 seq584 111 1e-19 SEQ17914 95.1 1e-14 seq1044 87.8 2e-12 seq309 82.4 6e-11 >seq245 Length=1203420 Score = 134 bits (148), Expect = 1e-26 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || |||||||| || ||||| || || | | Sbjct 1784 CCCCTC--AGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAA 1841 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || |||||||| ||||| ||| | || || |||||||||||| || | Sbjct 1842 GGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGA 1901 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||||||||| |||||| ||||| | | | || |||| ||||||| | Sbjct 1902 TGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCT 1961 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| ||||||||||| || | || || || || ||||||||||||| Sbjct 1962 CCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTTTGA 2012 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 20988 TTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATA 21047 || || ||||| ||||| | |||||| || | || |||||||| ||||| ||| | || Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 21048 AGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCG 21107 || ||||||||||| ||| | ||||||||||| |||||| ||||| | | Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 21108 ACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAAT 21167 | || |||| |||||| |||| ||| |||||||||||||| | || || || || Sbjct 1712 ATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 1771 Query 21168 ATTTGCAT 21175 || ||||| Sbjct 1772 ATCTGCAT 1779 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| |||| |||| || |||||||| || ||||| || || | | Sbjct 1223 CCCCTC--AGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAA 1280 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 |||| || | || |||||||| ||||| ||| | || || ||||||||||| ||| | Sbjct 1281 GGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAA 1340 Query 21070 CGCCTTCCTTGTCGGCGATCTT 21091 ||||||||||| |||||| Sbjct 1341 TACCTTCCTTGTCCTGGATCTT 1362 >seq584 Length=770825 Score = 111 bits (122), Expect = 1e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 20988 TTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATA 21047 || || ||||| ||||| | |||||| || | || |||||||| ||||||||| | || Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 21048 AGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCG 21107 || ||||||||||| ||| | |||||||||||| ||||||| || || | | Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 21108 ACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAAT 21167 | || |||| |||||| || | ||| ||||| || || ||||| ||||| || || Sbjct 448469 ATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAG 448528 Query 21168 ATTTGCATT 21176 || |||||| Sbjct 448529 ATCTGCATT 448537 >SEQ17914 Length=8076 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 20956 GCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTT 21015 |||| || ||| |||| | || ||||||||| || | ||||| ||||| | |||| | | Sbjct 1852 GCAGGCTCAGCGCCATGTACATAGTGGACTCTTTCTTGATGTTGTAGTCAGACAGGATGT 1793 Query 21016 GGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTT 21075 || | |||||||||| ||||| | | || || |||| |||||| || | |||| Sbjct 1792 GGCCATCCTCCAGCTTCTTGCCAGTGAATATCAGCCTCTTCTGGTCAGGTGGGATACCTT 1733 Query 21076 CCTTGTCGGCGATCTTTTGTTTCACCTGGCCGA--CAGTATCACCGGGCTC--CGTTTCC 21131 ||||||| | |||| || || | || || |||| |||||| | |||| Sbjct 1732 CCTTGTCTTGGCTCTTGGCCTTGACATTCTTGATGGTGTGTCACTGGGCTCGACCTTTCA 1673 Query 21132 ACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 | || ||||||||||| || | ||||| ||||| || ||||| ||| Sbjct 1672 AGAGTGATGGTCTTGCCTGTCAGGGTTTTTACAAAGATCTGCATGTTG 1625 >seq1044 Length=525964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| | |||||||||||||||||||| ||||| | | Sbjct 400050 CCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 399991 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || || | || |||||||| || || ||| | || ||||||||||| || || Sbjct 399990 AAAGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 399931 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| | |||||| || || | | | || || | ||| || | Sbjct 399930 ATCCCTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGCC 399871 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 | | || |||||||| || || | ||||| ||||| || ||||| ||| Sbjct 399870 TTGAGTGTGATGGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCATCTTG 399820 >seq309 Length=1089319 Score = 82.4 bits (90), Expect = 6e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || |||||||| || ||||| || || | ||||| || | || ||||||||| Sbjct 175569 TGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCTTCCAGCTGT 175510 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || | ||||||||| ||| || | ||||||||| || |||||| Sbjct 175509 TTGCCGGCAAAGCTAGGCCTCTGCTGGCCCAGTGGGATGCCTTCCTTATCCTAGATCTTG 175450 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 ||||| | | | || |||| ||||||| Sbjct 175449 GCCTTCACATTCTCAATGGTGTCACTGGGCTCC 175417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421905171684788