Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq245 152 5e-32 seq584 134 1e-26 seq41 87.8 2e-12 seq5258 84.2 2e-11 seq806 84.2 2e-11 seq186 84.2 2e-11 >seq245 Length=1203420 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || |||||||| ||||||||| | || || || || Sbjct 2010 AAAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCC 1951 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | ||||| || |||||||| |||| Sbjct 1950 AGTGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGA 1892 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || ||||| |||||||| || | |||||||| || || Sbjct 1891 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGATTA 1832 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| | || ||||| || || | ||| ||||||| || Sbjct 1831 CAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGCCTGAGGGGTGG 1781 Score = 113 bits (124), Expect = 5e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| Sbjct 1779 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCAGT 1720 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || || || ||| | ||||| Sbjct 1719 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCA 1661 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 1660 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 1601 Query 40869 CATCCAGAA 40877 ||||||||| Sbjct 1600 CATCCAGAA 1592 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| || || || ||| | |||||||| | ||||||| | Sbjct 1370 TCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAGCAGAGGCTCATCTTTG 1311 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| |||||||| || | |||||||| || |||||||||||||||||| | | Sbjct 1310 CCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGATTACAACATCCAGAAGGAGTCGA 1251 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | ||||| || || | ||| ||||||| ||| Sbjct 1250 CCCTGCACCTGGTCCTCCGCCTGAGGGGTGGC 1219 >seq584 Length=770825 Score = 134 bits (148), Expect = 1e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| | || || |||||||||||| | || ||||| ||| Sbjct 448537 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAAACCATCACCCTAGAGGTCGAGCCCAG 448478 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| ||| || | ||||| || ||||||||| | ||||| Sbjct 448477 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 448418 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| |||||||| |||||||| || | |||||||| ||||||||| Sbjct 448417 GCAGAGGCTGATCTTTGCGGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 448358 Query 40869 CATCCAGAA 40877 ||||||||| Sbjct 448357 CATCCAGAA 448349 >seq41 Length=2266706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | ||| | || ||||||||||| ||||| | || ||||| |||||| || Sbjct 1097418 GAGCCGTTACTGAGAGAAAACCCCCGCCGCTTCGTTGTCTTTCCCATCGAATACCATGAT 1097477 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| || |||||||| || |||||||| | || ||||| Sbjct 1097478 ATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAAGAGGT 1097530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | |||||||| || || || || || ||||||| || ||| ||| || Sbjct 1099840 GGAGAGCGTGTTGTGGCCTTTGCAGCGGTAGAAGGAATCTTCTTCTCTGGCTCTTTTGCA 1099899 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 | ||||| ||||||||||| || || || ||||||||||| || || ||| ||||| Sbjct 1099900 TCGATATTCTGGCTCAAGAAGCGGGGGCTGATGCCCGGCCTTACGTTTTCCAATGAGCTT 1099959 Query 117152 ATCTCCAGGGACGAGG 117167 || ||| ||||||| Sbjct 1099960 ATTAGCAGAGACGAGG 1099975 >seq5258 Length=100039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || ||||| || ||| |||| |||| || ||| || Sbjct 993 AAGATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCGTCACGCTCGAGGTTGAACCC 934 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| || || | || || || || || || | || Sbjct 933 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 874 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||| |||| || || || |||||||| || | || || | |||||| Sbjct 873 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 814 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| | || || ||||| |||||| Sbjct 813 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTG 778 >seq806 Length=630265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 40683 CCGAAAA-ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 40741 |||| || ||||| || || || || || || ||||| || ||||||| || | | | Sbjct 94980 CCGACAAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCATGCTCAAGGCTG 94921 Query 40742 AAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG 40801 || || | |||| | ||| | |||| || || | || || || || || || Sbjct 94920 AACCCTCAGACACTATAGAAAATGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTC 94861 Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 | || ||||| |||| |||| || || || |||||||| || | || || | | Sbjct 94860 CTGATCAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTG 94801 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||||||||| ||||||||| |||| || ||||| |||||| Sbjct 94800 ACTACAACATTCAGAAGGAGTCCACCCTTCATCTTGTGTTG 94760 >seq186 Length=1368741 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || ||||| || |||||||| |||| | ||| || Sbjct 837224 AAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTCGAGGCTGAATCC 837283 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| || || | || || || || || || | || Sbjct 837284 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 837343 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||| |||| || | || |||||||| || | || || | |||||| Sbjct 837344 CAGCAGAGACTGATCTCTGCTGAAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 837403 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| ||||||||| || | || ||||| |||||| Sbjct 837404 AACATTCAGAAGGAGTCCTCCCTTCATCTTGTGTTG 837439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514776156569680