Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5258 89.7 8e-13 seq1743 89.7 8e-13 >seq5258 Length=100039 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| || || | ||| | ||||| || ||| || || || || || || Sbjct 764 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 822 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | || ||| || | || ||||||||||| |||| ||| |||||||| ||||| Sbjct 823 CAAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 882 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 883 AATTCCTTCCTTATCCTG 900 >seq1743 Length=339712 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||||| || || | ||| | ||||| || ||| || || || || || || Sbjct 2369 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGA-ATGTTGTAGTCAGA 2311 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| || ||| |||| || ||||||||||| |||| ||| |||||||| ||||| Sbjct 2310 CAAAGTATGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGG 2251 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 2250 AATTCCTTCCTTATCCTG 2233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742887032354560