Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq847 127 2e-24 seq41 89.7 5e-13 >seq847 Length=614715 Score = 127 bits (140), Expect = 2e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 15884 CTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATT 15943 ||||||||||| ||| || | || ||||||||| | | | || ||| |||| | | Sbjct 61511 CTTTAAAAATCTGCATCCAGGGTGAAGACATTATCTGTAGTTTCTGCCATGACTGCAAAT 61570 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| ||| |||||| || ||||||||||||||||| |||||||||||||| ||| Sbjct 61571 CGCTGATACTCAGAAACTCTTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTTT 61630 Query 16004 TCCATAAAATCAAAAGGATTTTTTG 16028 |||||||||||||| ||||||| || Sbjct 61631 TCCATAAAATCAAAGGGATTTTCTG 61655 >seq41 Length=2266706 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| || ||| | || || || | |||| ||| |||||||| ||||| |||| Sbjct 1101540 TTGACATCACACCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTC 1101481 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 |||||| ||||||||||||||| || ||||| ||||||| Sbjct 1101480 CTTCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTT 1101442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462114280149800