Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq128 1097 0.0 seq951 154 1e-32 seq587 91.5 1e-13 >seq128 Length=1574224 Score = 1097 bits (1216), Expect = 0.0 Identities = 1042/1333 (78%), Gaps = 21/1333 (2%) Strand=Plus/Plus Query 107304 TCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGG 107363 |||| ||| |||||||| | |||| |||| || || || | ||||| ||||| Sbjct 281269 TCCCCACCCCTGAAGATGATTTCATGGAGGAAG---CTCTGTTGGCGTTATCATGTGTGG 281325 Query 107364 GCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAA 107423 ||||||| ||||| |||||||||||||| || | |||| || |||||||| | Sbjct 281326 ACCCTGGGATGCTACATGCTGCTGGCCGTCATTGCCCTGAAGCTGTCCCTCAG-----AC 281380 Query 107424 TGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGAC 107483 || | ||| ||||| || ||| | || || ||| |||| ||||| Sbjct 281381 TGAGGTGT-------------CTGGACTCTGAGGAATATCAAAGCCAGTACTGCAGGGAT 281427 Query 107484 ATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACG 107543 | ||||||| | ||||||||||||||||||||| |||||||||||||| ||| |||| Sbjct 281428 TTCCTGTACAAGACCCTGAAGCTGCCAGCAAAGAGGTCCATCAACTGTTCAGGGGTCACT 281487 Query 107544 CGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAG 107603 |||||||| ||| ||| ||| ||||||| || || | |||||||| | |||| || Sbjct 281488 CGAGGGGAGCAGACAGCGGTGATCCAGGCTCTGCTGAATAACCTGGAGATTAAGAGGAAA 281547 Query 107604 CGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAG 107663 ||| ||| |||| | || | ||||| | ||| || |||||||||| |||||| Sbjct 281548 CGGCAGCCCTTCACAGAGGCCGACTACCTTAGCATGACGGCTGACTGTGAGCACTTCAAA 281607 Query 107664 GCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCC 107723 ||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 281608 ATCCAGAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGGCCGACTTCCCCATTGCG 281667 Query 107724 TACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTAT 107783 ||||| |||||||| ||||||||||| || ||||||||| ||||||||||||| ||||| Sbjct 281668 TACTCCATGGTGGTTCATGAGAAGATCGAGAACTTTGAAAGGCTGCTGCGAGCTGTGTAC 281727 Query 107784 GCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAG 107843 |||||||||||||||||||||| || ||||| |||||| ||||| | ||||| || Sbjct 281728 ACCCCTCAGAACATATACTGTGTTCATGTGGACCAGAAGTCTCCAGAAATCTTCAAGCAG 281787 Query 107844 GCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCG 107903 || |||| ||||||| || |||||||| ||||||||| | || ||||||||||| | Sbjct 281788 GCAGTCAGGGCCATTGCCTCATGCTTCCCGAATGTCTTCTTAGCTAGTAAGTTGGTATCA 281847 Query 107904 GTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTC 107963 ||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||||||| || Sbjct 281848 GTGGTGTATGCTTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGCATGGAAGACTTGATC 281907 Query 107964 CAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAG 108023 |||||| | ||||||||||| ||| | ||||| || |||||||||||||| ||||| ||| Sbjct 281908 CAGAGCCCCGTGCCATGGAAATACCTCCTGAACACCTGCGGGACAGACTTTCCCATCAAG 281967 Query 108024 ACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCT 108083 |||||||| |||||||||| |||||||||| | ||||| || |||||||||||||||| Sbjct 281968 ACCAATGCTGAGATGGTCCAGGCCCTCAAGCTATTGAATGGGCAGAACAGTATGGAGTCA 282027 Query 108084 GAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACA 108143 |||||||| ||| ||||| | ||||||||||| | ||||||||||| || | || Sbjct 282028 GAGGTACCGCCTGCACACAAAACATCCCGCTGGAAATATCACTATGAGGTGAGAGGCGCA 282087 Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 ||||| ||| |||||| |||| ||||||||| |||| | |||||||||| ||| Sbjct 282088 TTGTACATAACCGGCAAGAGGAAGACCCCTCCCCCAAATAACATGACCATGTTCACTGGG 282147 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCC 108263 || ||||| | ||||||||||| | ||| | ||||||| ||| | || | ||| || Sbjct 282148 AACGCCTACATGGTGGCCTCTCGGGACTTCATTGAACATGTATTAAGCGACTCCAAAGCC 282207 Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323 ||| |||| | |||||||| |||||||||||||| || || || ||||| ||||||||| Sbjct 282208 CAACAACTGATCGAATGGGTAAAAGACACCTATAGTCCTGATGAGCACCTTTGGGCCACC 282267 Query 108324 CTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCA 108383 || |||||||| | ||||||||||| || | ||| |||||||||| | || ||||| Sbjct 282268 CTCCAGCGTGCCTCATGGATGCCTGGATCAGCTCCCTTGCACCCCAAGTTTGACCTCTCA 282327 Query 108384 GACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATG 108443 ||||||| | || || ||||| |||||||||| ||||||||||||| || Sbjct 282328 GACATGAGATCTATTGCGAGGCTAACCAAGTGGCAGGACCACGAGGGAGACATCGAGGCC 282387 Query 108444 GGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCC 108503 ||||||||||| ||||| ||||| || || || | | |||| ||||| ||||| ||| | Sbjct 282388 GGGGCGCCTTACGCACCGTGCTCAGGGATGCACCAGCGGGCTATCTGTATTTATGGGTCT 282447 Query 108504 GGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGG 108563 || |||||| ||||||| || |||||||| ||||||||||| |||||||||||||| | | Sbjct 282448 GGAGACCTGCACTGGATACTTCAGAACCACCACCTCTTGGCCAACAAGTTTGACCCAAAG 282507 Query 108564 GTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGG 108623 ||||||||||| || || ||||| ||||||| || ||||| | ||||||||||| ||| Sbjct 282508 GTGGATGATAATGTTCTTCAGTGTCTAGAAGAATATTTACGTTACAAGGCCATCTACGGG 282567 Query 108624 ACTGAACTTTGAG 108636 |||||||| |||| Sbjct 282568 ACTGAACTGTGAG 282580 >seq951 Length=571742 Score = 154 bits (170), Expect = 1e-32 Identities = 584/897 (65%), Gaps = 51/897 (6%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || ||| || ||||| || || || ||||| || | ||| Sbjct 400675 CCCCTTAGTAAAGAAGAGGCAGGCTTTCCAATTGCATATTCCATCGTGGTTCACCATAAG 400616 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGT--ATGCCCCTCAGAACATATACTGTG 107805 ||||||| |||| |||| ||| | ||| | | |||||| ||||| | ||||| Sbjct 400615 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCC--CAGAATTTCTACTGCA 400558 Query 107806 TCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT 107865 |||| ||||| ||| | || | || || || || || |||| |||| Sbjct 400557 TCCATGTGGACAAGAAAGCAGAGGAATCCTTTTTAGCCGCAGTGGCGGGCATTGCGTCCT 400498 Query 107866 GCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCA 107925 ||||| |||||||| ||||||| |||||| || ||||||||||||||| Sbjct 400497 GCTTCGATAATGTCTTTGTGGCCAGCCAGTTGGAGAATGTTGTTTATGCCTCCTGGAGTC 400438 Query 107926 GAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAA 107983 | || || || ||||| ||||| ||| | ||| || | |||| | | ||| | ||||| Sbjct 400437 GGGTTCAGGCCGACCTCAACTGCATGAAGGACCTG-TACAGA-ATGAATGCAAACTGGAA 400380 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 |||||| | ||| || || | || ||||| || || ||||| || || ||| Sbjct 400379 GTACTTGATTAATCTCTGTGGTATGGATTTCCCTATTAAAACCAACCTGGAAATTGTCAG 400320 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGTC 108100 | |||||| ||| | ||| | |||| |||| ||| || | ||| | | Sbjct 400319 GAAGCTCAAGTCGTTCATAGGTGAAAACAACCTGGAAACTGAGAAGATGCCTCCCAA--- 400263 Query 108101 CaaaaaaaaTCGCTGGAAATACCGCTA---------TGAGGTGA--CAGAC--ACACT-- 108145 ||| || | | |||||| | || | ||| | || | ||| ||||| Sbjct 400262 CAAGGAAGAAAGATGGAAAAAGCGGCACACCATTGTTGATGGGAAGCTGACTAACACTGG 400203 Query 108146 -GTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGA 108204 ||| || | ||| | | ||| || || | || | || | || |||| | Sbjct 400202 GGTAGCCAA--AGC--------GCAGCCT-CCACTCAAAACT--CCTCTTTTTTCAGGCA 400156 Query 108205 ATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCC 108263 ||||| ||||||| | | | | | ||| ||||| |||| || || |||| Sbjct 400155 GCGCCTACTTTGTGGTCAGTAGGGAATATGTAGGCCATGTGCTAGAAAATGAAAATATCC 400096 Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323 |||| | | ||||||| | ||||| || ||||| ||||| ||| |||||||| Sbjct 400095 AAAAG-TTCATGGAATGGGCGCAGGACACATACAGCCCAGACGAGTTCCTTTGGGCCACT 400037 Query 108324 CTTCAGCGTGCTCCGTGGA-TGCCTGGCTCT-GTTCCTAGCCA-CCCCAAGTATCACATC 108380 | ||||| | ||| || | | ||||| ||| | ||| ||| | |||||| || | Sbjct 400036 ATCCAGCG-GATCCCTGAAGTCCCTGGTTCTCGCCCCT--CCAGCAATAAGTATGACTTG 399980 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGC 108440 || ||||||| ||||||||| ||| | ||||||||||||||| ||| || || || | Sbjct 399979 TCTGACATGAATGCCATCGCGAGGTTTGTCAAGTGGCAGTACTTCGAAGGCGACGTTTCC 399920 Query 108441 ATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGG 108500 | || || ||||| | || ||| |||| | || | | || | ||| | | ||| Sbjct 399919 AGAGGCGCTCCTTACCCCCCGTGCAATGGAGTGCACGTGCGCTCCGTGTGCGTCTTCGGA 399860 Query 108501 GCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || |||||| || ||||| || | || || ||||| || || |||||||| ||| Sbjct 399859 GCGGGGGACTTGAGATGGATGCTGCGCAAGCACCACCTTTTTGCCAACAAGTTCGAC 399803 >seq587 Length=766563 Score = 91.5 bits (100), Expect = 1e-13 Identities = 173/252 (69%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| ||||| | |||||||| || ||||| || | | | ||||| ||||||| Sbjct 39455 ATGCCCC--AGAACGTCTACTGTGTGCATGTGGACAGGAGGGCGACGGAGACCTTCAAAG 39512 Query 107842 AGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCC 107901 |||||| || | | ||| |||||||||| |||| ||||| |||| ||| | Sbjct 39513 GGGCGGTGGAGCAGTTGGTGAGCTGTTTCCCCAATGCCTTCCTGGCCTCTAAGATGGAGC 39572 Query 107902 CGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG- 107960 ||||||| || | || ||| | | || |||||||||||||| || | || || Sbjct 39573 CGGTGGTCTACGGTGGCTTCTCCCGGCTCCAGGCTGACCTGAACTGCATCAAGGATCTGG 39632 Query 107961 ----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCC 108016 |||| ||| || || ||||| ||| | || || || ||||| |||||||| Sbjct 39633 TGGCCTCC-GAG----GTCCCCTGGAAATACGTTCTCAACACCTGCGGCCAGGACTTCCC 39687 Query 108017 CATAAAGACCAA 108028 | | || ||||| Sbjct 39688 CCTGAAAACCAA 39699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347976806322882