Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq245 120 2e-22 seq2265 84.2 2e-11 >seq245 Length=1203420 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| |||| | | |||| |||||| || ||||||||| |||||||| || Sbjct 1781 CCACCCCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1840 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || ||||| || || | || ||| ||||| || || Sbjct 1841 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 1900 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || ||| || | | | | |||| | ||||||| Sbjct 1901 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 1960 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||| ||| || |||||||||||||| |||||||| ||||||||||| ||| Sbjct 1961 TCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATTTTG 2011 Score = 109 bits (120), Expect = 4e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 ||||| |||||||||||| ||| ||| | || ||||| || || ||||| || ||| Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 | || ||| ||||| || || | ||| ||||||||| || || ||| || | | Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | | |||| | ||| ||||||| ||| || |||||||| ||||| |||||||| ||| Sbjct 1712 ATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 1771 Query 45329 ATTTGCAT 45336 || ||||| Sbjct 1772 ATCTGCAT 1779 >seq2265 Length=264906 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || |||| ||||| || ||||||||| | | ||| | || ||| Sbjct 262268 ACCAAGTGCAGGATGGTCTCTTTCTGGATATTGTAGTCGGACTGGGTGCGGCCATCCTCC 262327 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTC 45243 || || || || |||||||||| || ||| |||||||| || | || |||||||| Sbjct 262328 AGCTGCTTGCCAGCGAATATCAGCCTCTGCTGGTCGGGTGGGATGCCTTCCTTGTC 262383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394743963149653