Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq584 98.7 8e-16 seq1743 82.4 6e-11 seq1044 82.4 6e-11 seq245 82.4 6e-11 >seq584 Length=770825 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 18138 TTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATA 18197 || || ||||||||||||| || || | |||||||| || ||||||||| |||| Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 18198 AGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCA 18257 || || || || || ||| | ||||||||| || || | | |||||| | || Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 18258 ACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAA 18317 | ||||||| ||||||| || | ||||||| |||| || || || ||||| || || Sbjct 448469 ATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAG 448528 Query 18318 ATTTGCATT 18326 || |||||| Sbjct 448529 ATCTGCATT 448537 >seq1743 Length=339712 Score = 82.4 bits (90), Expect = 6e-11 Identities = 167/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 18084 TTTTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTT 18141 ||||| |||| ||| | | || || ||||| | || | ||||| || || || |||| Sbjct 2386 TTTTCCTTTTCTTAGCACCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTT 2327 Query 18142 GAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTC 18201 ||||||||||||| | || || | | |||||| | || || || ||| |||| |||| Sbjct 2326 GAATGTTGTAGTCAGACAAAGTATGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGTC 2267 Query 18202 TTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAG 18261 | || ||||| || | ||||||||||| || | ||| | | | | | || Sbjct 2266 TCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATAG 2207 Query 18262 TGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTT 18321 |||| ||| || || | |||||| | || | ||||| || || |||||||| | Sbjct 2206 TGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCTGGTCAGGGTCTTCACAAAAATCT 2147 Query 18322 GCATTTT 18328 |||| || Sbjct 2146 GCATCTT 2140 >seq1044 Length=525964 Score = 82.4 bits (90), Expect = 6e-11 Identities = 168/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 400065 TTCCTTTTCTTAGCACCACCACGGAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGA 400006 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 ||||||||||| | || || | |||||||| || || || ||| |||| ||||| Sbjct 400005 ATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTC 399946 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTA-TCGGCAATTTGTTGCTTGACCTGTGCAACAGT 18262 || ||||| || | ||||||||| || | | ||| ||| || | | | | || Sbjct 399945 TGCTGATCAGGAGGAATCCCTTCCTTATTCTGGATCTTG-GCCTTTACATTTTCTATTGT 399887 Query 18263 GTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTG 18322 ||| | ||| || | | | |||||| | || || || | ||||| |||||||| || Sbjct 399886 GTCCCAGGGTTCAGCCTTGAGTGTGATGGTCTTCCCTGTAAGGGTTTTCACAAAAATCTG 399827 Query 18323 CATTTT 18328 ||| || Sbjct 399826 CATCTT 399821 >seq245 Length=1203420 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || |||||||| || | | || | |||| Sbjct 1796 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGGGTGCGGCCATCT 1855 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || ||| || | ||||||||| || Sbjct 1856 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTGTCC 1915 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | ||| ||||||| |||||| || | ||||||| | Sbjct 1916 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 1975 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| || || || || ||||||||||| Sbjct 1976 TTGCCCGTCAGGGTCTTCACGAAGATTTGCATTTT 2010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379025952418785