Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6788 120 3e-22 seq5258 96.9 3e-15 seq1743 96.9 3e-15 seq245 96.9 3e-15 seq1868 87.8 2e-12 >seq6788 Length=68851 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| || ||| |||||||| || || || || || || ||||| ||||| || || Sbjct 50160 ACCTCATCCTTGCTGGTGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTT 50219 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| ||| Sbjct 50220 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTG 50279 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||| ||||| ||||| || Sbjct 50280 CCCGTCTCTGTCTGAGACTCAATGATGGC 50308 >seq5258 Length=100039 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| ||||| || || || |||| |||| |||||||| Sbjct 993 AAGATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCGTCACGCTCGAGGTTGAACCC 934 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | |||| || || | || ||| |||||||| | || || || Sbjct 933 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 874 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || || ||||| || ||| ||||||| ||| || || || Sbjct 873 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 814 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || || |||||||| || | ||||| Sbjct 813 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACT 773 >seq1743 Length=339712 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || ||||| ||||| | || || ||||| |||| |||||||| Sbjct 2140 AAGATGCAGATTTTTGTGAAGACCCTGACCAGGAAGACCATCACGCTCGAGGTTGAACCC 2199 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | |||| | || | || ||| |||||||| | || || || Sbjct 2200 TCGGACACTATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2259 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT-CTATGACTATGAGCGATTA 31368 |||||| | || || || ||||| || ||| | ||||| | || ||| || || || Sbjct 2260 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCAT-ACTTTGTCTGACTA 2318 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || || |||||||| || | ||||| Sbjct 2319 CAACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACT 2360 >seq245 Length=1203420 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| |||||||| ||||| ||||| ||||| ||||| || |||||| | || || || Sbjct 2012 TCAAA-ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAG 1954 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | || | || || | || ||||||||||||| | || || Sbjct 1953 CCCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCG 1894 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| || | ||| Sbjct 1893 GACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGAT 1834 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || || || ||||| || || ||||| || | |||||||| || Sbjct 1833 TACAACATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGCCTGAGGGGTGG 1781 >seq1868 Length=317776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/224 (69%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| || ||||| || || || || || ||||| |||| |||||||| Sbjct 105033 AAGATGCATATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCC 104974 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGC--GGACAAGGAAGGCGTGCCGCCC 31306 || || | | | |||| || || | | || | | ||| ||| |||| | || || Sbjct 104973 TCAGAGACTATAGAAAATGTAAAGGCCAACAAGATCCAGGATAAGTAAGGAATTCCTCCT 104914 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 || |||||| | || || || ||||| || ||| ||||||| ||| || || Sbjct 104913 GATCAGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAC 104854 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||||||||| ||||| | | |||||| || | ||||| Sbjct 104853 TACAACATTCAAAACGAATCCATCCCTCATCTTGTGTTGAGACT 104810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445383079900560