Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq41 120 4e-22 seq6788 116 5e-21 seq847 98.7 1e-15 seq47 89.7 6e-13 >seq41 Length=2266706 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| ||||| | || || |||||||| || |||||||| || || ||||| | Sbjct 1099975 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGCCCCCGCTTCT 1099916 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || || ||||||||||||||||| || ||||||| Sbjct 1099915 TGAGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCTACCGCTGCAAAGG 1099856 Query 33724 CAATAAGTCTCTCTCC 33739 | | || | |||||| Sbjct 1099855 CCACAACACGCTCTCC 1099840 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Minus Query 33230 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 33285 |||| ||| |||||| |||| || | |||| ||| || |||| ||||| || | Sbjct 1101587 GTTTACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCCG-TTGAACTTGACATCACAC 1101529 Query 33286 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33345 |||| | ||||| || || || || || || || || || || |||||||| | ||| | Sbjct 1101528 CCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 1101469 Query 33346 TATTTTCCATGAAATCAAACGGATT 33370 ||||||||||||| ||||| ||||| Sbjct 1101468 TATTTTCCATGAAGTCAAATGGATT 1101444 >seq6788 Length=68851 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || ||||||||||| ||||| ||||| |||||||| || ||||| || || ||||| | Sbjct 46065 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTAGTGTAAGGTTCAATG 46124 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 || |||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 46125 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 46184 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 46185 CTGTTTCTTATACCATA 46201 Score = 116 bits (128), Expect = 5e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 ||||| ||||||| ||||| || || | || || || || | ||| || || || | Sbjct 49101 GATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAGCTTGCTTCCAGG 49160 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 || ||||||||||| ||||||||||||| |||||| || || ||||| ||||| ||| Sbjct 49161 GCTCCGTAATAAATAGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCTGGGCTCTCA 49220 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || ||||| | | | ||| || || || |||| ||||| || ||||| || ||||| Sbjct 49221 AAGGGATACCTCATCAAAATGAAAGCATCTGCTAGGCCTTGTACCCCAATTCCAATAGGC 49280 Query 62799 CTATGTCTCTTATTAGA 62815 | ||| | ||||| || Sbjct 49281 CGATGGCGTTTATTTGA 49297 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || |||||||| || |||||| || | || || || ||||| || | Sbjct 43241 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGTATGT 43300 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 43301 TTAGAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 43360 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||| ||||| | |||| | || || |||| Sbjct 43361 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 43411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | | || Sbjct 52119 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 52178 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 ||||| || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 52179 CTGTTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 52238 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| ||||| Sbjct 52239 AGGCTCCAGGTAAATGGC 52256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || ||||| || | |||||||| || || |||||||| | ||||||||||| ||| Sbjct 59101 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGAAAGTAGGTTG 59160 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || ||||| || | || ||||| || ||||| || || | || | ||| | | Sbjct 59161 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAGC 59220 Query 63783 ATGTGCTGAGGTCTTTCA 63800 || ||||| ||||||||| Sbjct 59221 ATATGCTGTGGTCTTTCA 59238 >seq847 Length=614715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || || || || || | || || ||||| || ||||| ||||| ||||| | ||| || Sbjct 68526 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 68585 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 68586 AGCCAGAATATAGCAGCAAACGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 68644 >seq47 Length=2181506 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 188170 CGTGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGC 188229 || |||||||||||||||| ||||||||||| | ||||| |||||||| |||||||||| Sbjct 476942 CGCGCTCCTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCGTCGGCCAGCGTGC 476883 Query 188230 ACATACGAATGG 188241 |||| || |||| Sbjct 476882 ACATCCGTATGG 476871 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 188376 TCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATC 188435 |||||||| | ||||||||||| ||||||||||| |||||||| | |||||| ||||| | Sbjct 470252 TCGGATCTCTGGGCTTGATTTTTGCATTGACTTTGCACAGACACACACATCCTCTGAACC 470193 Query 188436 TGTACCTACTTTGTG 188450 | ||||| |||| || Sbjct 470192 TTTACCTGCTTTTTG 470178 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||| | | | || | | ||||| || |||| |||||||| ||| Sbjct 464502 GTTACTTTCTATGACGTGTACACGGTGCTGAAGGCTTTTATTCTGACGACTGCAGTCTTT 464443 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| |||| | | ||||||||| ||||||||||||||||| ||| ||| | |||| Sbjct 464442 CTTGGCTTGACAGCCTATACTCTACAGTCAAAGAGAGATTTCAGCAAATTTGGAGCAGG 464384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629276011973040