Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq847 111 1e-19 seq6788 87.8 2e-12 >seq847 Length=614715 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| || || || || || ||||| ||||| || | ||| ||||| | |||| || | Sbjct 68524 CTTCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCT 68583 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || ||||| ||||| ||||| || ||||| ||||| | Sbjct 68584 TTAGCCAGAATATAGCAGCAAACGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 68643 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 68644 CCACCACTCTTTCCCC 68659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || |||||||| | |||||| ||||| ||||| |||| ||| || || Sbjct 72595 ATCTCTGATGTAAGTATCTATCAGTAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 72654 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 72655 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 72700 >seq6788 Length=68851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 ||||| || ||||| || || ||||| | || || || || ||||| || ||||||||| Sbjct 46065 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTAGTGTAAGGTTCAATG 46124 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || |||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 46125 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 46184 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 46185 CTGTTTCTTATACCAT 46200 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAA-TT 38471 || || || || || | |||||||| ||||| | ||||| | || || || || || Sbjct 59101 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGA-AAGTAGGTT 59159 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 |||||||| ||| || |||| ||||| | |||||| || | ||| |||||||| || Sbjct 59160 GTATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAG 59219 Query 38532 CATATGTTGTGGTCTTTC 38549 |||||| ||||||||||| Sbjct 59220 CATATGCTGTGGTCTTTC 59237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468121909667920