Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq47 172 7e-38 seq41 129 8e-25 seq6788 113 6e-20 seq847 102 1e-16 >seq47 Length=2181506 Score = 172 bits (190), Expect = 7e-38 Identities = 155/195 (79%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | |||||| || | |||||| |||| ||||||||||| |||||| Sbjct 462655 TTACTTTTTATTAACTGCTTCCAGAAACCTTAACAGGTGCAGGAACAGATTGACGATATC 462714 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 || ||||| | |||| | ||||||||||| ||||| |||||||| || || || || || Sbjct 462715 CAGGTAGAGACTGATGGCAGCTAACACATACTCTTCTGGCGAGAGTTTGTGCATCAGAGA 462774 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| || |||||||| ||||| |||||||| | |||||| || | || | || |||||| Sbjct 462775 GTGTGTATCATAGATGATGAAGCCGCAGAAAAGAAGGGCGCCTAGAGACGCCAAGACCAG 462834 Query 9407 CTCCACTGTTTCACT 9421 ||||||||||| || Sbjct 462835 GTCCACTGTTTCGCT 462849 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||||||||||||||| ||||||||||| || |||| ||||| Sbjct 464384 CCTGCTCCAAATTTGCTGAAATCTCTCTTTGACTGTAGAGTATAGGCTGTCAAGCCAAGA 464443 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||| ||||| || ||||| | || || | ||| |||||||||||||| Sbjct 464444 AAGACTGCAGTCGTCAGAATAAAAGCCTTCAGCACCGTGTACACGTCATAGAAAGTAAC 464502 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| |||||||| ||||||| ||||||||||| ||||||| Sbjct 476871 CCATACGGATGTGCACGCTGGCCGACGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 476930 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 ||||||||| || |||| || Sbjct 476931 TGGAGGAGCGCGGGTAGCGG 476950 >seq41 Length=2266706 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||||||||| ||||| | || ||||||||||| || |||||||| || || ||||| | Sbjct 1099975 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGCCCCCGCTTCT 1099916 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||| ||||| ||||||||||| || ||||||| Sbjct 1099915 TGAGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCTACCGCTGCAAAGG 1099856 Query 36300 CAATAAGTCTCTCTCC 36315 | | || | |||||| Sbjct 1099855 CCACAACACGCTCTCC 1099840 >seq6788 Length=68851 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || || |||||||| ||||| ||||| |||||||| || ||||| || || ||||| | Sbjct 46065 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTAGTGTAAGGTTCAATG 46124 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 || |||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 46125 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 46184 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 46185 CTGTTTCTTATACCATA 46201 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 ||||| ||||||| || || || || | || || || || ||||| || || || | Sbjct 49101 GATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAGCTTGCTTCCAGG 49160 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 || ||||||||||| ||||| ||||||| |||||| || || ||||| |||| ||| Sbjct 49161 GCTCCGTAATAAATAGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCTGGGCTCTCA 49220 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || ||||| | | | ||| || || ||||||| ||||| || ||||| || ||||| Sbjct 49221 AAGGGATACCTCATCAAAATGAAAGCATCTGCTAGGCCTTGTACCCCAATTCCAATAGGC 49280 Query 65592 CTATGTCTCTTATTAGA 65608 | ||| | ||||| || Sbjct 49281 CGATGGCGTTTATTTGA 49297 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || |||||||| || |||||| || | || || || ||||| || | Sbjct 43241 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGTATGT 43300 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 43301 TTAGAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 43360 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | ||| ||||| | |||| | || || |||| Sbjct 43361 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 43411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| |||||||| ||||||||||| || | || | ||| | || || Sbjct 52119 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 52178 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 ||||| || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 52179 CTGTTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 52238 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| ||||| Sbjct 52239 AGGCTCCAGGTAAATGGC 52256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | |||||||| || || |||||||| | ||||||||||| ||| Sbjct 59101 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGAAAGTAGGTTG 59160 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || ||||| || | || ||||| || ||||| || || | || | ||| | | Sbjct 59161 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAGC 59220 Query 66576 ATGTGCTGAGGTCTTTCA 66593 || ||||| ||||||||| Sbjct 59221 ATATGCTGTGGTCTTTCA 59238 >seq847 Length=614715 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || || || || || | || || ||||| || ||||| ||||| ||||| | ||| || Sbjct 68526 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 68585 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| |||||||| ||||||||||||||||| || |||||||| Sbjct 68586 AGCCAGAATATAGCAGCAAACGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 68644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657606828982120