Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq847 105 6e-18 seq41 84.2 2e-11 >seq847 Length=614715 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 ||||||| || || || ||||| |||||||| || || || ||||| || |||| || | Sbjct 68524 CTTCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCT 68583 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| ||||||||||||||||| || || || || |||||||| || || ||||| | Sbjct 68584 TTAGCCAGAATATAGCAGCAAACGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 68643 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 68644 CCACCACTCTTTCCCC 68659 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 12800 CTTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACAT 12858 ||||||||||| ||| || | || |||| ||| || || | || ||| || | | Sbjct 61511 CTTTAAAAATCTGCATCCAGGGTGAAGACATTATCTGTAGTT-TCTGCCATGACTGCAAA 61569 Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 | ||||| || ||||||||| ||||| || |||||||| |||||||| ||||| || Sbjct 61570 TCGCTGATACTCAGAAACTCTTTTCTCAAAGAAATTTGTTTTCCCTTCTAATGAAATGTT 61629 Query 12919 TTCCATAAAATCGAAAGGATTTT 12941 |||||||||||| || ||||||| Sbjct 61630 TTCCATAAAATCAAAGGGATTTT 61652 Score = 89.7 bits (98), Expect = 4e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 ||||||||| |||||||| || ||||||||||| ||| ||||||||||||| || | Sbjct 62536 TCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATTCCAATGAGGCC 62595 Query 13042 TACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||||||||| Sbjct 62596 GACAGGCAAGGCTTCTGTTAAAAA 62619 >seq41 Length=2266706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| ||| ||| | || || |||| |||| || ||||| |||||||| |||| Sbjct 1101540 TTGACATCACACCCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTC 1101481 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 |||||| |||||||||||||| || || || ||||||| Sbjct 1101480 CTTCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTT 1101442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430621058025786