Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq3821 95.1 8e-15 >seq3821 Length=151595 Score = 95.1 bits (104), Expect = 8e-15 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| |||||||| |||| |||||||||||| || || || || || ||||| Sbjct 43994 CATATCTTTGTAGTCTGCTCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 43935 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || | | | || | || ||| | |||| |||||||| ||| |||||||| | Sbjct 43934 CCCTTCCTGTC-GGGCAGAGAATCCCAGGCTGTCCAGAAAGTCTCGGGACCCATTGGCAT 43876 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||| | || ||||| ||| || ||||| | |||||||| || Sbjct 43875 CCCAGATTCTCACTCCCTTGGAGGACAGTTCTTTAGCATTTGTGGATCC 43827 Score = 84.2 bits (92), Expect = 1e-11 Identities = 110/151 (73%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||| || ||||| || || | ||||| Sbjct 45551 GCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATATTGAAGGGCACGCCTAGACCCATA 45492 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 || || ||||||||||| ||||| || || |||||| | | ||| || |||||||| Sbjct 45491 TCACCT-GACCTCTGGTAAAGCTGGCAAGACAGCTCTCCATTCACCACATAGAACTGACA 45433 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 | || | || ||||| || || || ||| Sbjct 45432 GAGGGCATGACAGGGAGGCAGTGCCATCAGG 45402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339852423640389