Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq490 159 5e-34 SEQ48808 134 2e-26 >seq490 Length=842669 Score = 159 bits (176), Expect = 5e-34 Identities = 207/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || || | |||| ||||| || || | ||| | |||| |||| Sbjct 613952 AAGGGACAGCCCTTCACATTATTGCAGATGAGAGATTGAATTGAGGCAGTGTTGATGATC 613893 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| || | ||||| || || ||||| || |||||||| || ||||||||| Sbjct 613892 TTAAAGCCTGCTTCTCCTCCAAACGTGCTTGGCTTCCAGTACTGAGGAGAGCAGATGGGA 613833 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| |||| |||||| Sbjct 613832 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCGAAG 613773 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 ||||||| ||||| ||||||||||||| | | | |||| ||||| || |||||| Sbjct 613772 ATGGCGTCTGGACGAGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 613713 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||| ||||| | || ||||| || |||||||| ||||||| Sbjct 613712 TCACTGTAGAGGGCTTTCAGCTCGGCGGCCATTTCCTTCTCTCCTG 613667 Score = 114 bits (126), Expect = 2e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9632 TGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACA 9691 ||||||| |||| | ||||| ||| || || || || | || || || || |||| Sbjct 612428 TGGTCTGGAACAACCGCTCGTCCTCCCACTCGGGGTGCTCCTGCTTGAGCACGTCACACA 612369 Query 9692 CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAA 9751 ||| |||||| |||| |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 612368 CTCGGTTGTGCTCCCGCAGCCAGATTGTAGCGTACATCATCAGACCCGGCACCAGGCCGA 612309 Query 9752 AAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGT 9811 | | || || || ||||| | |||| | || || | | ||| || |||||||| | Sbjct 612308 AGACTTCCTGGCCCACAGCGAACCGCAGGTGCTCAGGGATGTGGGGCGGGTAGATCATCT 612249 Query 9812 GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCTGA 9864 |||| ||| | || | ||| || |||| || || || || | |||| Sbjct 612248 CGGCCTGCGTGTCTCTCACGGTGGGAGGGTACACCTCTCCATCGATGAGCTGA 612196 >SEQ48808 Length=1625 Score = 134 bits (148), Expect = 2e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 8777 CTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAAC 8836 |||||||||||||| |||| || |||||| || ||| |||||| |||||||||||| Sbjct 1625 CTGGGTTTCCAGTACTCCGGCGAACAGATGGGATTTCCCAGGAGGCCCTTGAGGGAAAAC 1566 Query 8837 GGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACC 8896 |||||||| | ||| | || ||||| || ||||||| |||||| || |||||||| Sbjct 1565 GGAGCCCCAATCTCTATCATACTCTCCCCAAAGATGGAGTTGGGCTGGCACTTTTCCAGG 1506 Query 8897 AAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCA 8956 | | || | ||| ||||||| ||| |||||||| ||||| | || | || ||| Sbjct 1505 AGCAGCCCCGGGTAGAACTCCAAAGCATCGATGTCGCCGTACATCTCCTGTAACTCCGCA 1446 Query 8957 GCGATTTCCTTTTCTCCTG 8975 || || |||| ||||||| Sbjct 1445 GCCATCTCCTCCTCTCCTG 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707915530667920