Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5258 123 2e-23 SEQ11613 105 6e-18 seq584 102 7e-17 seq245 102 7e-17 seq1044 93.3 4e-14 >seq5258 Length=100039 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | ||||| |||||||| | ||| || || || ||| | Sbjct 775 TCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCC 834 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| ||||| ||||||| | ||| |||||||| |||||||| ||||| || Sbjct 835 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 894 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || || | ||||| Sbjct 895 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAC 954 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||| || || || ||||||||||||||||| Sbjct 955 GGTCTTTCCCGTCAGGGTCTTCACAAAGATCTGCAT 990 >SEQ11613 Length=25137 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| ||||| ||||||| | ||| |||||||| |||||||| ||||| || Sbjct 17224 ATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 17283 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || || | ||||| Sbjct 17284 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGAGTGAT 17343 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || ||||||||||||||||| Sbjct 17344 GGTCTTCCCCGTCAGGGTCTTCACAAAGATCTGCAT 17379 >seq584 Length=770825 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| || || || || ||||| || Sbjct 448381 ATCTTCCAGCTGCTTGCCCGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTT 448440 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || ||||||||||| | | |||||| | | ||||| || | ||||| Sbjct 448441 GTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCTAGGGTGAT 448500 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||| | |||||||| ||||||||||| Sbjct 448501 GGTTTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 448536 >seq245 Length=1203420 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || ||| ||||||| | || ||||| || || ||||||||||| || Sbjct 1624 ATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATACCTTCCTT 1683 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| ||| | | |||||| | | ||||| || | ||||| Sbjct 1684 GTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGAT 1743 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || || || ||||| ||||||||||| Sbjct 1744 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 1779 >seq1044 Length=525964 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | || || |||||||| | ||| || || || ||| | Sbjct 400039 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCC 399980 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | ||| |||||||| |||||||| ||||| || Sbjct 399979 ATCTTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTT 399920 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 | | || || ||||| || | | ||||| | | || | | | ||||| Sbjct 399919 ATTCTGGATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGCCTTGAGTGTGAT 399860 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| ||||||||||| |||||||| Sbjct 399859 GGTCTTCCCTGTAAGGGTTTTCACAAAAATCTGCAT 399824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447905708793480