Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq41 132 6e-26 seq6788 113 6e-20 seq847 107 2e-18 >seq41 Length=2266706 Score = 132 bits (146), Expect = 6e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| || || ||||||||||| || |||||||| || || ||||| | Sbjct 1099975 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCGGGCATCAGCCCCCGCTTCT 1099916 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || ||||| ||||||||||||||||| || ||||||| Sbjct 1099915 TGAGCCAGAATATCGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCTACCGCTGCAAAGG 1099856 Query 33446 CAATAAGTCTCTCTCC 33461 | | || | |||||| Sbjct 1099855 CCACAACACGCTCTCC 1099840 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/145 (74%), Gaps = 5/145 (3%) Strand=Plus/Minus Query 32952 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTC 33007 |||| ||| |||||| |||| || | |||| ||| || |||| ||||| || | Sbjct 1101587 GTTTACTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCCG-TTGAACTTGACATCACAC 1101529 Query 33008 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33067 |||| | ||||| || || || || || || || || || || |||||||| | ||| | Sbjct 1101528 CCATCCTCTGGTACTCGCCTACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 1101469 Query 33068 TATTTTCCATGAAATCAAACGGATT 33092 ||||||||||||| ||||| ||||| Sbjct 1101468 TATTTTCCATGAAGTCAAATGGATT 1101444 >seq6788 Length=68851 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || || |||||||| ||||| ||||| |||||||| || ||||| || || ||||| | Sbjct 46065 ACCTGGAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTAGTGTAAGGTTCAATG 46124 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 || |||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 46125 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 46184 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 46185 CTGTTTCTTATACCATA 46201 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 ||||| ||||||| || || || || | || || || || ||||| || || || | Sbjct 49101 GATCCCTCATATGTTTCATAGGGGCCATACTCCTTGGCGAGGTCACAGCTTGCTTCCAGG 49160 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 62687 || ||||||||||| ||||| ||||||| |||||| || || ||||| |||| ||| Sbjct 49161 GCTCCGTAATAAATAGTTTCAAAGATCTGCTTATTCAGCAACTGGGCTTCTGGGCTCTCA 49220 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 || ||||| | | | ||| || || || |||| ||||| || ||||| || ||||| Sbjct 49221 AAGGGATACCTCATCAAAATGAAAGCATCTGCTAGGCCTTGTACCCCAATTCCAATAGGC 49280 Query 62748 CTATGTCTCTTATTAGA 62764 | ||| | ||||| || Sbjct 49281 CGATGGCGTTTATTTGA 49297 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 52119 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 52178 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 52179 CTGTTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 52238 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| ||||| Sbjct 52239 AGGCTCCAGGTAAATGGC 52256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| || || || |||||||| || |||||| || | || || || ||||| || | Sbjct 43241 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCGTAGTTAGGCTCAGCAATATGTATGT 43300 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 43301 TTAGAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTCT 43360 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | ||| ||||| | |||| | || || |||| Sbjct 43361 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 43411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || ||||| || | |||||||| || || |||||||| | ||||||||||| ||| Sbjct 59101 GTCCCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACCTCTCAGAAAGTAGGTTG 59160 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || || ||||| || | || ||||| || ||||| || || | || | ||| | | Sbjct 59161 TATGTTTCAATTGCAGCATCAATATCTTCTTTGTGAATGCCCACAGACACCCTCATCAGC 59220 Query 63732 ATGTGCTGAGGTCTTTCA 63749 || ||||| ||||||||| Sbjct 59221 ATATGCTGTGGTCTTTCA 59238 >seq847 Length=614715 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || || || || || || || || ||||| || ||||| ||||| ||||| | ||| || Sbjct 68526 TCATCCCTGCTGATCAGCTCATTTGAAAAGGTAAGTCCAGGCATGAGGCCTCTCTTCTTT 68585 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || |||||||| ||||| ||||||||||| ||||||||||| Sbjct 68586 AGCCAGAATATAGCAGCAAACGATCCAGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 68644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622411519915880