Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq5258 91.5 1e-13 seq1743 91.5 1e-13 seq1044 86.0 5e-12 >seq5258 Length=100039 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| || ||||| || || || |||||||| ||| | || |||| || || Sbjct 993 AAGATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCGTCACGCTCGAGGTTGAACCC 934 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | | | ||||| || || ||||| ||||| | || |||| Sbjct 933 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 874 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||||| || | ||| || || || | ||||||| | || || | || || Sbjct 873 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 814 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| |||||||| | ||| | ||||||||| | || || || Sbjct 813 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 764 >seq1743 Length=339712 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| || || || || | || ||||| || |||| || || Sbjct 2140 AAGATGCAGATTTTTGTGAAGACCCTGACCAGGAAGACCATCACGCTCGAGGTTGAACCC 2199 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | | | |||| || || ||||| ||||| | || |||| Sbjct 2200 TCGGACACTATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2259 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||||| || | ||| || || || ||||||||| | | || || | || || Sbjct 2260 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCATACTTTGTCTGACTAC 2319 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| |||||||| | ||| | ||||||||| | || || || Sbjct 2320 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 2369 >seq1044 Length=525964 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| ||||| || || || || ||||| || || | | || || Sbjct 399821 AAGATGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACACTCAAGGCTGAACCC 399880 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||||| | | | | ||||| || || |||| ||||| | || |||| Sbjct 399881 TGGGACACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGGATTCCTCCTGAT 399940 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||||| || | ||| || || || | ||||||| | || || | || || Sbjct 399941 CAGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 400000 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| ||||| || | ||| | ||||||||| | || || || Sbjct 400001 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTCCGTGGTGG 400050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424987385343160