Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq584 109 5e-19 seq245 104 2e-17 seq5258 89.7 5e-13 seq1743 89.7 5e-13 seq6788 86.0 6e-12 seq2265 82.4 7e-11 >seq584 Length=770825 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 131047 TTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATT 131106 || || |||||||| ||| || |||||| || || ||||||||||| || |||| Sbjct 448349 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCCGCAAAGATC 448408 Query 131107 AAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCC 131166 | | ||||||||| || ||||| ||||| ||||| ||| || ||||| | ||| Sbjct 448409 AGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCA 448468 Query 131167 ACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 | || || ||| ||||| || | ||| | ||||||||| |||| ||||| ||||| Sbjct 448469 ATGGTGTCACTGGGCTCGACCTCTAGGGTGATGGTTTTACCAGTTAAGGTTTTCACGAAG 448528 Query 131227 ATCTGCAT 131234 |||||||| Sbjct 448529 ATCTGCAT 448536 >seq245 Length=1203420 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || || || || | || | |||||||||||| || ||||||||||| Sbjct 1781 CCACCCCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 1840 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | |||||||||||| ||| Sbjct 1841 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGG 1900 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 1901 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 1960 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| || ||||| Sbjct 1961 TCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 2007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 131047 TTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATT 131106 || || |||||||| ||| || |||||| || || ||||||||||| || |||| Sbjct 1592 TTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATC 1651 Query 131107 AAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCC 131166 | | ||||||||| || || || ||||| ||||| ||| || ||| | | ||| Sbjct 1652 AGCCTCTGCTGGTCAGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCA 1711 Query 131167 ACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 | || || ||| ||||| || | ||| | ||| || ||||| || || || ||||| Sbjct 1712 ATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 1771 Query 131227 ATCTGCAT 131234 |||||||| Sbjct 1772 ATCTGCAT 1779 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || || || || | || | |||||||||||| || ||||||||||| Sbjct 1219 GCCACCCCTCAGGCGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGA 1278 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 1279 AAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGG 1338 Query 131127 GATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 1339 AATACCTTCCTTGTC 1353 >seq5258 Length=100039 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || ||| | ||| | ||| |||||||||||||||||||| || | Sbjct 764 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 823 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || |||||||| || || |||| | | |||||| || ||||| Sbjct 824 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 883 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||| || | || || | Sbjct 884 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 943 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || ||||| || || || || || || || || |||||||| Sbjct 944 TCGAGCGTGACGGTCTTTCCCGTCAGGGTCTTCACAAAGATCTGCAT 990 >seq1743 Length=339712 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | || ||| | ||| | ||| |||||||||||||||||||| || | Sbjct 2369 CCACCACGGAGTCTCAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGAC 2310 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || ||||||||||| || || |||| | | |||||| || ||||| Sbjct 2309 AAAGTATGGCCATCTTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 2250 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||| || | || || | Sbjct 2249 ATTCCTTCCTTATCCTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACC 2190 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || | ||| || || || || ||||||||||| Sbjct 2189 TCGAGCGTGATGGTCTTCCTGGTCAGGGTCTTCACAAAAATCTGCAT 2143 >seq6788 Length=68851 Score = 86.0 bits (94), Expect = 6e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | || ||||| | ||||| ||||| || |||||||||||||| || ||||| | Sbjct 50176 TGTACTCCACTATCTCCGTGCACAGGTTGCTGCACTTGATGGTTCCCAGGTTCTGCTGGT 50235 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || |||| || || | || ||||||||||||||||| ||| ||||| ||| | Sbjct 50236 TGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTCTGTCTGAG 50295 Query 145788 TCTCCACGAT 145797 ||| | ||| Sbjct 50296 ACTCAATGAT 50305 >seq2265 Length=264906 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 131016 CAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCG 131075 ||| |||||||| || || | | | | ||| || || || ||||| ||| | |||||| Sbjct 262258 CAAGCGCAGCACCAAGTGCAGGATGGTCTCTTTCTGGATATTGTAGTCGGACTGGGTGCG 262317 Query 131076 CGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTC 131135 ||||| ||||||||||| ||| | || | | ||||||||| || ||||| ||||| Sbjct 262318 GCCATCCTCCAGCTGCTTGCCAGCGAATATCAGCCTCTGCTGGTCGGGTGGGATGCCTTC 262377 Query 131136 TTTGTCGGTGATTTTCTGCTTGA 131158 ||||| |||| || ||||| Sbjct 262378 CTTGTCTTTGATCTTGGCCTTGA 262400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471606910293120