Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1421 95.1 8e-15 seq5258 93.3 3e-14 SEQ60404 87.8 1e-12 seq1743 84.2 1e-11 seq1044 84.2 1e-11 seq1313 82.4 5e-11 >seq1421 Length=402085 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| || || ||||| || || || |||||| | Sbjct 106019 AAGCCCATTCCCTTGGCTGTGGTTTCACTGGACAGTAGGTAAGGACAGTGGGAATCTCAT 106078 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| | ||||||||||||||||||| Sbjct 106079 TCATCCATTCATGTGAGTCACTAATTAGATGACGA 106113 >seq5258 Length=100039 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| || |||||||||||| ||||| ||||||||| ||| | || Sbjct 778 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 837 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || ||||| ||||| || || | || ||||| | || | ||||| || || Sbjct 838 TTCCAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 897 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||| || |||||| || | || | || Sbjct 898 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGACGGT 957 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| ||| ||||| || |||||||| || Sbjct 958 CTTTCCCGTCAGGGTCTTCACAAAGATCTGCATCTT 993 >SEQ60404 Length=1274 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/95 (81%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| |||||| || ||||| | ||| || |||||||| Sbjct 168 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTGGAGAGTAGGTGGGGACAGTGGGAATCTCGT 227 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | || | ||| ||||| ||||||| ||||||||| Sbjct 228 TCAT-CACTCACGCGCGCCACTAATCAGATGACGA 261 >seq1743 Length=339712 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| || |||||||||||| ||||| ||||||||| | | | || Sbjct 2355 CAACACAAGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGGCCATC 2296 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||| || ||||| ||||| || || | || ||||| | || | ||||| || || Sbjct 2295 TTCTAGCTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 2236 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| | ||| | | ||| || |||||| || | || || || Sbjct 2235 CTGGATCTTGGCCTTTATATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 2176 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | |||| ||| ||||| || |||||||| || Sbjct 2175 CTTCCTGGTCAGGGTCTTCACAAAAATCTGCATCTT 2140 >seq1044 Length=525964 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| |||||||||||| ||||| ||||||||| ||| | || Sbjct 400036 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 399977 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || ||||| || || | || ||||| | || | ||||| || | Sbjct 399976 TTCCAGCTGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTTATT 399917 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | || || | |||| | | | ||| || || Sbjct 399916 CTGGATCTTGGCCTTTACATTTTCTATTGTGTCCCAGGGTTCAGCCTTGAGTGTGATGGT 399857 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || | ||||||||| || |||||||| || Sbjct 399856 CTTCCCTGTAAGGGTTTTCACAAAAATCTGCATCTT 399821 >seq1313 Length=432281 Score = 82.4 bits (90), Expect = 5e-11 Identities = 69/85 (81%), Gaps = 5/85 (6%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 ||||||||||||||||||||||||| | |||||||| ||||| || ||||| || Sbjct 399342 GCCCGTTCCCTTGGCTGTGGTTTCGATGGATAGTAGGTAGGGACAATGGGGATCTCATTC 399283 Query 25959 ATCCTTTCATGCGCGTCACTAATTA 25983 |||| |||||| ||||||||||| Sbjct 399282 ATCCACTCATGCCTGTCACTAATTA 399258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334666375347983