Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq245 102 7e-17 >seq245 Length=1203420 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| |||| || || ||||||| | || |||||| | Sbjct 2008 AATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 1949 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| ||||| || ||| ||||| ||||| || ||||| ||||| Sbjct 1948 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACCA 1889 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||||||||| || | ||||||| ||||| | |||||||| Sbjct 1888 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGATTACAA 1829 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 1828 CATCCAGAAGGAGTCGACCCTGCA 1805 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| | || || ||| | | Sbjct 1779 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCAGT 1720 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| |||||||| Sbjct 1719 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAG 1660 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| || ||| ||||| Sbjct 1659 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 1600 Query 25179 ATTCAAAA 25186 || || || Sbjct 1599 ATCCAGAA 1592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432964691440295