Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1743 102 7e-17 seq5258 96.9 3e-15 seq245 89.7 4e-13 seq1868 87.8 2e-12 seq1044 87.8 2e-12 seq806 84.2 2e-11 >seq1743 Length=339712 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | ||| | || || |||| || || || ||| || Sbjct 2140 AAGATGCAGATTTTTGTGAAGACCCTGACCAGGAAGACCATCACGCTCGAGGTTGAACCC 2199 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || |||| || || || || || ||||| || ||||| || ||| Sbjct 2200 TCGGACACTATAGAAAATATAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2259 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| || || ||| |||| ||| || || | || || ||| Sbjct 2260 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTAGAAGATGGCCATACTTTGTCTGACTAC 2319 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || ||| | ||| | || ||| || | || || ||| Sbjct 2320 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGGT 2370 >seq5258 Length=100039 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | || || || || ||||| || || || ||| || Sbjct 993 AAGATGCAGATCTTTGTGAAGACCCTGACGGGAAAGACCGTCACGCTCGAGGTTGAACCC 934 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || || || || || ||||| || ||||| || ||| Sbjct 933 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 874 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| || || ||| | || ||| ||| || | || || ||| Sbjct 873 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 814 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || || ||| | ||| | || ||| || | || || ||| Sbjct 813 AACATTCAAAAGGAGTCTACCCTTCATCTTGTGTTGAGACTCCGTGGTGGT 763 >seq245 Length=1203420 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || || |||||||| || || || || | || || || || |||| | || ||||| Sbjct 2013 GTCAAAATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAGGTGGAG 1954 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 ||| || ||| | || | | || || || || |||||||| || || ||||| Sbjct 1953 CCCAGTGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCACCG 1894 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || | || || ||||||||||| ||| | || ||| ||||||| | || ||| Sbjct 1893 GACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGAT 1834 Query 22393 TACAACATTCAAAAAGAATCCACC 22416 |||||||| || || || || ||| Sbjct 1833 TACAACATCCAGAAGGAGTCGACC 1810 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||| |||||||| || || || || | || || ||||||||||| Sbjct 1362 AAGATCCAGGACAAGGAAGGTATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 1303 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | || ||| ||||||| | || ||||||||||| || || || || ||| Sbjct 1302 CAGCTGGAAGATGGCCGCACCCTTTCTGATTACAACATCCAGAAGGAGTCGACC 1249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | ||||| || || |||| | || || || ||| Sbjct 1780 GATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCCAG 1721 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | | || || || || |||||||| |||||||| || || || Sbjct 1720 TGACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCTGACCA 1661 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||| ||| | || ||| ||||||| | ||||| ||||| Sbjct 1660 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 1601 Query 22398 CATTCAAAA 22406 ||| || || Sbjct 1600 CATCCAGAA 1592 >seq1868 Length=317776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | || || || || |||| || || || ||| || Sbjct 105033 AAGATGCATATTTTTGTGAAGACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCC 104974 Query 22276 ACCGATACCGTGGACGATATCAAA--CAAAAA-ATTCAAGACAAGGAGGGTATTCCACCC 22332 | || || | || || | || ||| || || || || ||| | || ||||| || Sbjct 104973 TCAGAGACTATAGAAAATGTAAAGGCCAACAAGATCCAGGATAAGTAAGGAATTCCTCCT 104914 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 ||||| || | || || ||||| || || ||| | || ||| ||| || | || || Sbjct 104913 GATCAGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACTTTGTCTGAC 104854 Query 22393 TACAACATTCAAAAAGAATCCA 22414 |||||||||||||| ||||||| Sbjct 104853 TACAACATTCAAAACGAATCCA 104832 >seq1044 Length=525964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| ||||| | || || || || |||| || | | ||| || Sbjct 399821 AAGATGCAGATTTTTGTGAAAACCCTTACAGGGAAGACCATCACACTCAAGGCTGAACCC 399880 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 || || | || || | || || || || | ||||| || ||||| || ||| Sbjct 399881 TGGGACACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAGGGATTCCTCCTGAT 399940 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| || || ||| | || ||| ||| || | || || ||| Sbjct 399941 CAGCAGAGACTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 400000 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || |||||| | ||| | || ||| || | || || ||| Sbjct 400001 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTCCGTGGTGGT 400051 >seq806 Length=630265 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| || || | || || || || ||| || | | ||| || Sbjct 94975 AAGATGCAGATTTTTGTGAAGACCCTTACGGGGAAGACCATCATGCTCAAGGCTGAACCC 94916 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || || || || || ||||| || ||||| || ||| Sbjct 94915 TCAGACACTATAGAAAATGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 94856 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| || || ||| | || ||| ||| || | || || ||| Sbjct 94855 CAGCAGAGACTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 94796 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || |||||| | ||| | || ||| || | || || ||| Sbjct 94795 AACATTCAGAAGGAGTCCACCCTTCATCTTGTGTTGAGACTCCGTGGTGGT 94745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419376093880045